CX296850

Overview
NameCX296850
Unique NameCX296850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length208
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:235..442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.841e-18
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.991e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA K
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.448e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGK
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.689e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGK
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3
Query:   96 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 37          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.732e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGK
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.486e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   69 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   69 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   69 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   69 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
The following BLAST results are available for this feature:
BLAST of CX296850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_PHYIN4.841e-1891.67Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA6.991e-1789.58Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP9.448e-1475.00Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC4.689e-1370.83Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE1.045e-1294.59Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
NEDD8_CAEEL5.732e-1162.50NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB1_DESAN7.486e-1165.22NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ9.777e-1163.04NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB2_ARATH9.777e-1163.04NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RUB1_ORYSJ9.777e-1163.04NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05803E05SK FerrChloL1 Citrus clementina cDNA clone C05803E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296850 ID=CX296850; Name=CX296850; organism=Citrus clementina; type=EST; length=208bp
TGGCCGATTACAATATCCAAAAGGAATCCACGCTTCATCTGGTGCTTCGT
CTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCAT
TACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGA
TCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCC
GGAAAGCA
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