CX296853

Overview
NameCX296853
Unique NameCX296853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:85..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 61/157 (38.85%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            MGV T  +E TS++  EK+F+ FV+  DT+LPK  P   K+VE I GDGGPG++K     +G        R+D ++KE   ++Y+ I+G  D  +  I+ +     +V T DGGS       F+ K  A + EE +K   E+   +FKALEAY +AN
Sbjct:    1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDG--DILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   63 GVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            GV     +  S +P EKLFK   L  DT++PK  P+ +K+V+++ G+GG G+IK     +   +   K R+DA+D+    Y YT I   GD  +  I+ +    K+V T DGGS  T    +     A I EE +K   +K   +FKA+EAY LAN
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTII--GGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            MG  + ++E TS++  EK+F   VL  DT++PK  P   K+VE + GDGG G+++     EG+       R DA++KE   Y+ T I+G  D  +  I+ +     VV T DGGS +     F+ K  A + EE +K    +   +FKA+EAY +AN
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVE-VKGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDG--DILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
The following BLAST results are available for this feature:
BLAST of CX296853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ALL1_APIGR1.354e-2138.85Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
RNS2_PANGI4.357e-2037.18Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA3.688e-1936.31Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05803E08SK FerrChloL1 Citrus clementina cDNA clone C05803E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296853 ID=CX296853; Name=CX296853; organism=Citrus clementina; type=EST; length=694bp
GCCGAATTCGGCACGAGGGTAGTTTTCATCTTCTTTCTTTGTTTAACTCT
TAGACAATCATGGGTGTTCTCACGTTGAATGTAGAGGATACAAGCACTCT
CCCCCCTGAAAAGTTGTTCAAACTTTTTGTCCTTCAGTTCGACACCCTTC
TGCCCAAAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGG
GATGGAGGCCCTGGAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGA
TTGGAAGTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGA
TATACAATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACT
ATTGATCATGTTTCTTATGAGAGTAAGGTTGTGGGCACCCCTGACGGAGG
AAGCAAGAGCACCGTTGTTATCAAGTTCTATCCCAAACCAGGTGCCGAGA
TTAAGGAAGAGCAGGTTAAGGGAGGCTTGGAAAAGGAGAAGGGAATTTTT
AAGGCTCTGGAAGCCTATGCCTTGGCAAACCCCAATGCCGTATAAGCTCT
TACGTCAACACTTCACCGCACTTGCGTCGCCTTTGTTGCAACATTATGAA
TAATCATGTTTATGGCTTCCGTATGTCGTGTCTCTTTGTTTTCAATATGC
CAATTTATATAATTGGCTTTTGGCTAAATAAAAAAAAAAAAAAA
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