CX296855

Overview
NameCX296855
Unique NameCX296855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:154..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.111e-43
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = -3 
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    4 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 113

HSP 2 Score: 54.299 bits (129), Expect = 1.111e-43
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSVESA+KEI LWF P+  I+++S  H W+YE
Sbjct:  115 NIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.436e-43
Identity = 68/111 (61.26%), Postives = 90/111 (81.08%), Query Frame = -3 
Query:  360 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 692
            EME+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++   + FA+KHY DL  +PFF  L ++++SGPV+AM+WEG+GV++ GR +IGAT+P +S PGTIRGDLA+  G
Sbjct:   87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVG 197

HSP 2 Score: 40.817 bits (94), Expect = 1.436e-43
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = -2 
Query:  253 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 360
            NIIHGSD  E+A+ EI+LWF P   +++ S+   W+Y
Sbjct:  199 NIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.448e-43
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = -3 
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    4 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRLMLGETNPADSKPGTIRGDFCIQVG 113

HSP 2 Score: 53.5286 bits (127), Expect = 1.448e-43
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSV+SA+KEI+LWF P+  ++++S  H W+YE
Sbjct:  115 NIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.887e-43
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = -3 
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    4 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 113

HSP 2 Score: 53.5286 bits (127), Expect = 1.887e-43
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSV+SA+KEI+LWF P+  ++++S  H W+YE
Sbjct:  115 NIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.887e-43
Identity = 66/109 (60.55%), Postives = 81/109 (74.31%), Query Frame = -3 
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRGLVGEII RFE+KGF L G+K +       ++HY DL  +PF+  L++Y+ SGP+VAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 114

HSP 2 Score: 53.9138 bits (128), Expect = 1.887e-43
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSVESAQKEI LWF P   I+++S  H WIYE
Sbjct:  116 NIIHGSDSVESAQKEINLWFKPAELIDFKSCAHDWIYE 153
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.205e-43
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = -3 
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 113

HSP 2 Score: 50.0618 bits (118), Expect = 3.205e-43
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:  115 NIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_CHICK (Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.205e-43
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = -3 
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFVHASEDLLKQHYIDLKDRPFYPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 114

HSP 2 Score: 55.0694 bits (131), Expect = 3.205e-43
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSVESAQKEI+LWF P   I+++S  H W+YE
Sbjct:  116 NIIHGSDSVESAQKEISLWFKPAELIDYRSCAHDWVYE 153
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.097e-43
Identity = 71/110 (64.55%), Postives = 84/110 (76.36%), Query Frame = -3 
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            ME+TF+MIKPDGVQR LVGEII RFE KGF+L GLK+M V    AEKHY     +PFF SL+++ITS PVVAM+W+GEGV+ + R IIGATNP  + PGTIRGD  I  G
Sbjct:    1 MERTFLMIKPDGVQRNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNPLNAEPGTIRGDFGISVG 110

HSP 2 Score: 45.8246 bits (107), Expect = 7.097e-43
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = -2 
Query:  250 FGYRDG-NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 378
            FG   G N+IHGSD  ++A+ E++LWF D  + NW  ++ PW+ E
Sbjct:  105 FGISVGRNLIHGSDGPDTAKDEVSLWFSDAELANWTPAITPWVVE 149
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.571e-42
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = -3 
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            ME+TF+ IKPDGVQRGLVG II RFE+KG++L GLKLM V R  AE+HY +   KPFF  L+ +ITSGPVVAM+WEG GV+   R +IGATNP  + PGT+RGD A+  G
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVG 110

HSP 2 Score: 45.0542 bits (105), Expect = 1.571e-42
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 360
            N+IHGSDS E+A++EI LWF     + W+ +L  W+YE
Sbjct:  112 NVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.045e-42
Identity = 67/109 (61.47%), Postives = 80/109 (73.39%), Query Frame = -3 
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQR LVGEII RFE+KGF L  +KL+       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  G
Sbjct:    5 ERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 113

HSP 2 Score: 51.6026 bits (122), Expect = 2.045e-42
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = -2 
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSVESA+KEI LWF P+  ++++S    WIYE
Sbjct:  115 NIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
The following BLAST results are available for this feature:
BLAST of CX296855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_MOUSE1.111e-4360.91Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]
NDK3_ARATH1.436e-4361.26Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDKB_PONAB1.448e-4360.91Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDKB_HUMAN1.887e-4360.91Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDK_COLLI1.887e-4360.55Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDKA_MOUSE3.205e-4363.30Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDK_CHICK3.205e-4360.55Nucleoside diphosphate kinase OS=Gallus gallus PE=... [more]
NDK_MICAN7.097e-4364.55Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_THEEB1.571e-4262.73Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDKA_CANFA2.045e-4261.47Nucleoside diphosphate kinase A OS=Canis familiari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803E11SK FerrChloL1 Citrus clementina cDNA clone C05803E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296855 ID=CX296855; Name=CX296855; organism=Citrus clementina; type=EST; length=694bp
AAGTGCAACCATCATGTGCTAACCATTAACAAACTCAATTCATAATACAG
TCAACAAAAAAGCTTAAATATTGTATATGGCAACCACAAGAATGAAAGCA
GCCAACATAACCAGGATTGGTCTCAATTTAACTCAATACTTCATAACAGT
TCACCAACAAGGAGTAACCATAAATAAGGAAATAGGGATAGGGATAGGGA
TAAGTCTAACTGCAGGAACAATTAGGCTCCTCAACCAAACATTAGTTTAC
TCATAGATCCAAGGGTGAAGGCTGCTCTGCCAGTTAATAGGGCCATCAGG
GAACCACAAGGCGATTTCTTTCTGGGCACTCTCAACTGAGTCACTTCCAT
GGATGATATTCCCGTCACGATAGCCAAATCACCACGGATGGTTCCAGGAG
CAGACTGCGCAGGGTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACA
ACACCTTCACCCTCCCAAATCATAGCAACAACAGGACCAGAGGTAATGTA
CTCAATCAGAGAACCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCT
TCTCAGCAAAAGGGCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAG
AAACCCTTCTTCTCAAATCTGATGATGATTTCACCAACAAGGCCTCTTTG
GACCCCATCGGGCTTGATCATGATGAAAGTTTGTTCCATTTCTT
back to top