CX296855

Overview
NameCX296855
Unique NameCX296855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:154..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_BURCC (Nucleoside diphosphate kinase OS=Burkholderia cenocepacia (strain MC0-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.183e-21
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = -3 
Query:  372 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 689
            +E+T  +IKPD V + ++G+I  RFE  G  +   ++  + R  AEK Y   +++PFF  L++++ SGPV+  + EGEG +   R ++GAT+P ++  GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108

HSP 2 Score: 33.4982 bits (75), Expect = 1.183e-21
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  295 DGNIIHGSDSVESAQKEIALWFPD 366
            D N +HGSD+ E+A  EIA +FP+
Sbjct:  112 DANAVHGSDAAETAAVEIAFFFPE 135
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_BURCA (Nucleoside diphosphate kinase OS=Burkholderia cenocepacia (strain AU 1054) GN=ndk PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.183e-21
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = -3 
Query:  372 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 689
            +E+T  +IKPD V + ++G+I  RFE  G  +   ++  + R  AEK Y   +++PFF  L++++ SGPV+  + EGEG +   R ++GAT+P ++  GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108

HSP 2 Score: 33.4982 bits (75), Expect = 1.183e-21
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  295 DGNIIHGSDSVESAQKEIALWFPD 366
            D N +HGSD+ E+A  EIA +FP+
Sbjct:  112 DANAVHGSDAAETAAVEIAFFFPE 135
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_LEPBL (Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.185e-21
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = -3 
Query:  384 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIR 689
            M +TFIMIKPDGV+   VG I+ R EK+GF + GLK + +    A++ Y+  S++PF+  L  Y++SGP+VA   E +  V   R +IGAT+P ++A GTIR
Sbjct:    1 MSKTFIMIKPDGVKNKHVGNILARIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYSDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIR 102

HSP 2 Score: 27.7202 bits (60), Expect = 1.185e-21
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = -2 
Query:  301 RDGNIIHGSDSVESAQKEIALWF 369
            ++ N +HGSDS E+A  E++ +F
Sbjct:  109 KEANAVHGSDSDENAALEVSFFF 131
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_LEPBJ (Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.185e-21
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = -3 
Query:  384 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIR 689
            M +TFIMIKPDGV+   VG I+ R EK+GF + GLK + +    A++ Y+  S++PF+  L  Y++SGP+VA   E +  V   R +IGAT+P ++A GTIR
Sbjct:    1 MSKTFIMIKPDGVKNKHVGNILARIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYSDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIR 102

HSP 2 Score: 27.7202 bits (60), Expect = 1.185e-21
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = -2 
Query:  301 RDGNIIHGSDSVESAQKEIALWF 369
            ++ N +HGSDS E+A  E++ +F
Sbjct:  109 KEANAVHGSDSDENAALEVSFFF 131
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_ANAD2 (Nucleoside diphosphate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = -3 
Query:  327 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA------IVTGISSMEVTQLRV 689
            +E+T  +IKPDGV++G++G+II RFE+KG     ++L  + +  AE  Y    ++PFFG L++++TSGPVV M+ EGE  V   R I+GAT+P ++  GTIR D A       V G  S+E  ++ V
Sbjct:    3 IERTLSIIKPDGVEKGIIGKIIGRFEEKGLKPVAIRLTQLSKAEAEGFYAVHKARPFFGDLVKFMTSGPVVLMVLEGENAVARNREIMGATDPKKADAGTIRKDFATDIEKNTVHGSDSVENAKIEV 129
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_FRATW (Nucleoside diphosphate kinase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.540e-21
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = -3 
Query:  372 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 686
            ++T  +IKPD V++ ++GEI  RFEK G  +   K+  + +  AE+ Y     +PFF +L+E++ SGPV+  + EGE  +   R ++GATNP ++  GTIR D A
Sbjct:    4 QRTLSIIKPDAVEKNVIGEIYSRFEKAGLRIIAAKMKHLSKAEAERFYAVHKDRPFFSALVEFMISGPVMIQVLEGENAIAKNRELMGATNPKEAKAGTIRADFA 108

HSP 2 Score: 29.261 bits (64), Expect = 1.540e-21
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = -2 
Query:  286 DGNIIHGSDSVESAQKEIALWFPDGPI 366
            D N +HGSD+ ++A +EI  +F D  I
Sbjct:  112 DANAVHGSDAEDTAAQEIRYFFSDTEI 138
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_FRATT (Nucleoside diphosphate kinase OS=Francisella tularensis subsp. tularensis GN=ndk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.540e-21
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = -3 
Query:  372 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 686
            ++T  +IKPD V++ ++GEI  RFEK G  +   K+  + +  AE+ Y     +PFF +L+E++ SGPV+  + EGE  +   R ++GATNP ++  GTIR D A
Sbjct:    4 QRTLSIIKPDAVEKNVIGEIYSRFEKAGLRIIAAKMKHLSKAEAERFYAVHKDRPFFSALVEFMISGPVMIQVLEGENAIAKNRELMGATNPKEAKAGTIRADFA 108

HSP 2 Score: 29.261 bits (64), Expect = 1.540e-21
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = -2 
Query:  286 DGNIIHGSDSVESAQKEIALWFPDGPI 366
            D N +HGSD+ ++A +EI  +F D  I
Sbjct:  112 DANAVHGSDAEDTAAQEIRYFFSDTEI 138
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_FRAT1 (Nucleoside diphosphate kinase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.540e-21
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = -3 
Query:  372 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 686
            ++T  +IKPD V++ ++GEI  RFEK G  +   K+  + +  AE+ Y     +PFF +L+E++ SGPV+  + EGE  +   R ++GATNP ++  GTIR D A
Sbjct:    4 QRTLSIIKPDAVEKNVIGEIYSRFEKAGLRIIAAKMKHLSKAEAERFYAVHKDRPFFSALVEFMISGPVMIQVLEGENAIAKNRELMGATNPKEAKAGTIRADFA 108

HSP 2 Score: 29.261 bits (64), Expect = 1.540e-21
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = -2 
Query:  286 DGNIIHGSDSVESAQKEIALWFPDGPI 366
            D N +HGSD+ ++A +EI  +F D  I
Sbjct:  112 DANAVHGSDAEDTAAQEIRYFFSDTEI 138
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_ALHEH (Nucleoside diphosphate kinase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.540e-21
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = -3 
Query:  372 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 689
            +E+T  +IKPD V + ++GEI  RFEK G  +   +++ + R  AE  Y     +PFF  L+ ++ SGPV+  + EGE  +   R I+GATNPA++A GT+R D A
Sbjct:    3 VERTLSIIKPDAVAKNIIGEIYNRFEKAGLKIVAARMVHLSREQAEGFYAVHKERPFFNDLVGFMISGPVMVQVLEGENAIVKNREIMGATNPAEAAAGTLRHDYA 108

HSP 2 Score: 29.261 bits (64), Expect = 1.540e-21
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = -2 
Query:  301 DGNIIHGSDSVESAQKEIALWF 366
            D N +HGSD+ E+A++EI  +F
Sbjct:  112 DANAVHGSDAPETAKQEIEFFF 133
[Close]
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_BURM1 (Nucleoside diphosphate kinase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ndk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.540e-21
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = -3 
Query:  372 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 689
            +E+T  +IKPD V + ++G+I  RFE  G  +   ++  + R  AEK Y   +++PFF  L++++ SGPV+  + EGEG +   R ++GAT+P ++  GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVAARMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108

HSP 2 Score: 32.7278 bits (73), Expect = 1.540e-21
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  295 DGNIIHGSDSVESAQKEIALWFPD 366
            D N +HGSD+ E+A  EIA +FP+
Sbjct:  112 DANAVHGSDAPETAAVEIAFFFPE 135
The following BLAST results are available for this feature:
BLAST of CX296855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BURCC1.183e-2138.68Nucleoside diphosphate kinase OS=Burkholderia ceno... [more]
NDK_BURCA1.183e-2138.68Nucleoside diphosphate kinase OS=Burkholderia ceno... [more]
NDK_LEPBL1.185e-2146.08Nucleoside diphosphate kinase OS=Leptospira borgpe... [more]
NDK_LEPBJ1.185e-2146.08Nucleoside diphosphate kinase OS=Leptospira borgpe... [more]
NDK_ANAD21.354e-2142.52Nucleoside diphosphate kinase OS=Anaeromyxobacter ... [more]
NDK_FRATW1.540e-2140.00Nucleoside diphosphate kinase OS=Francisella tular... [more]
NDK_FRATT1.540e-2140.00Nucleoside diphosphate kinase OS=Francisella tular... [more]
NDK_FRAT11.540e-2140.00Nucleoside diphosphate kinase OS=Francisella tular... [more]
NDK_ALHEH1.540e-2141.51Nucleoside diphosphate kinase OS=Alkalilimnicola e... [more]
NDK_BURM11.540e-2138.68Nucleoside diphosphate kinase OS=Burkholderia mult... [more]

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Properties
Property NameValue
Genbank descriptionC05803E11SK FerrChloL1 Citrus clementina cDNA clone C05803E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296855 ID=CX296855; Name=CX296855; organism=Citrus clementina; type=EST; length=694bp
AAGTGCAACCATCATGTGCTAACCATTAACAAACTCAATTCATAATACAG
TCAACAAAAAAGCTTAAATATTGTATATGGCAACCACAAGAATGAAAGCA
GCCAACATAACCAGGATTGGTCTCAATTTAACTCAATACTTCATAACAGT
TCACCAACAAGGAGTAACCATAAATAAGGAAATAGGGATAGGGATAGGGA
TAAGTCTAACTGCAGGAACAATTAGGCTCCTCAACCAAACATTAGTTTAC
TCATAGATCCAAGGGTGAAGGCTGCTCTGCCAGTTAATAGGGCCATCAGG
GAACCACAAGGCGATTTCTTTCTGGGCACTCTCAACTGAGTCACTTCCAT
GGATGATATTCCCGTCACGATAGCCAAATCACCACGGATGGTTCCAGGAG
CAGACTGCGCAGGGTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACA
ACACCTTCACCCTCCCAAATCATAGCAACAACAGGACCAGAGGTAATGTA
CTCAATCAGAGAACCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCT
TCTCAGCAAAAGGGCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAG
AAACCCTTCTTCTCAAATCTGATGATGATTTCACCAACAAGGCCTCTTTG
GACCCCATCGGGCTTGATCATGATGAAAGTTTGTTCCATTTCTT
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