CX296855

Overview
NameCX296855
Unique NameCX296855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:154..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.101e-38
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = -3
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            ME+TF+M+KPDGVQR L+GEI++RFE+KG  L G KLM V    A +HY++ + KPFFG L+++ITSGPV AM+WEGE  +   R +IG TNP ++ PGTIRGD  +  G
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVG 110          

HSP 2 Score: 36.5798 bits (83), Expect = 8.101e-38
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = -2
Query:  253 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 360
            NIIHGSDS ESA +EI L+F  D  +  +  ++ WIY
Sbjct:  112 NIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWIY 148          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.374e-37
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = -3
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   +  AEKHY     +PFF  L+ +ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDL I  G
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIG 112          

HSP 2 Score: 36.965 bits (84), Expect = 1.374e-37
Identity = 18/38 (47.37%), Postives = 21/38 (55.26%), Query Frame = -2
Query:  250 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 360
            N+IHGSD  E+A  EI LWF    + NW  S   W  E
Sbjct:  114 NVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.774e-37
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E++FI IK    QR L+GEII RFEKKGF L G+K++      A KHYEDL+ KPFF  L+++ +SG VVAM++EG+ VV+TGR +IGAT+P+QSAPGTIR DL I TG
Sbjct:   73 ERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSAPGTIRFDLCIETG 181          

HSP 2 Score: 41.2022 bits (95), Expect = 1.774e-37
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = -2
Query:  271 NIIHGSDSVESAQKEIALWFPDGPI-NWQSS 360
            NIIHGSDS ESA  EIALWF +  I NW S+
Sbjct:  183 NIIHGSDSNESAAHEIALWFKEDEIANWVST 213          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_STAS1 (Nucleoside diphosphate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.332e-37
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = -3
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            ME+TF+MIKPD VQR L+GEII R E+KG  L G K MTV +  AE+HY + + KPF+  LI +ITS PV AM+ EGE  V   R IIG TNP+++ PGTIRGDL +  G
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIERKGLKLVGGKFMTVPQSLAEEHYAEHTDKPFYKHLISFITSAPVFAMVVEGEDAVHVARHIIGKTNPSEATPGTIRGDLGLTVG 110          

HSP 2 Score: 45.4394 bits (106), Expect = 2.332e-37
Identity = 23/38 (60.53%), Postives = 25/38 (65.79%), Query Frame = -2
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            NIIHGSDSVESA KEI LWF  D    +  S   W+YE
Sbjct:  112 NIIHGSDSVESANKEINLWFKADELSEYSESRESWLYE 149          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.958e-37
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = -3
Query:  360 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 689
            ME+T++MIKPDGVQRGLVGEII RFEK+GF + GLK++ + R  AEKHY +   KPFF  L+ YITS PVVAM+ EG+  V   R ++GAT+P ++APGTIRG   I  G
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIG 110          

HSP 2 Score: 39.6614 bits (91), Expect = 3.958e-37
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = -2
Query:  250 NIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 360
            N+IHGSDS  SAQ+EIAL+F  D  + +   L  W+YE
Sbjct:  112 NVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.153e-37
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = -3
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  G
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIG 112          

HSP 2 Score: 34.6538 bits (78), Expect = 5.153e-37
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = -2
Query:  259 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 360
            NIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:  114 NIIHGSDGEDTAKFEIDLWFNEEELCEWETSDAKW 148          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.173e-37
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  372 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 689
            ME+TF+M+KPDGV+RGL+GEII RFE KG++L  L+++T     AE HY +   KPFFG L+E++TSGPVVAM WEGE +V   R +IG T P  + PGTIRGD A
Sbjct:    1 MEKTFLMVKPDGVKRGLIGEIISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELVEFLTSGPVVAMEWEGEDIVAVSRLMIGKTKPVDAQPGTIRGDFA 106          

HSP 2 Score: 38.891 bits (89), Expect = 5.173e-37
Identity = 14/22 (63.64%), Postives = 21/22 (95.45%), Query Frame = -2
Query:  295 NIIHGSDSVESAQKEIALWFPD 360
            N+IHGSDSV+SA++E++LWF +
Sbjct:  112 NVIHGSDSVDSAERELSLWFAE 133          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.713e-37
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = -3
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRG V EI+ RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  G
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIG 112          

HSP 2 Score: 35.039 bits (79), Expect = 6.713e-37
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = -2
Query:  259 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 360
            NIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:  114 NIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKW 148          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.746e-37
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = -3
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  G
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIG 112          

HSP 2 Score: 33.8834 bits (76), Expect = 8.746e-37
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = -2
Query:  259 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 360
            NIIHGSD  ++A+ EI LWF +  +  W +S   W
Sbjct:  114 NIIHGSDGEDTAKFEIDLWFNEEELCEWYTSDSKW 148          
BLAST of CX296855 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.484e-36
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = -3
Query:  360 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 686
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IG+T P ++ PGTIRGDLAI  G
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGSTKPLEAEPGTIRGDLAIDIG 112          

HSP 2 Score: 34.2686 bits (77), Expect = 1.484e-36
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = -2
Query:  259 NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 360
            NIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:  114 NIIHGSDGEDTAKFEIDLWFNEEELCEWETSDLKW 148          
The following BLAST results are available for this feature:
BLAST of CX296855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACLD8.101e-3856.36Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]
NDK_PROMA1.374e-3760.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKM_DICDI1.774e-3759.63Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDK_STAS12.332e-3757.27Nucleoside diphosphate kinase OS=Staphylococcus sa... [more]
NDK_PELTS3.958e-3759.09Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_PROM25.153e-3761.47Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_EXISA5.173e-3758.49Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_PROMS6.713e-3760.55Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM98.746e-3761.47Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM01.484e-3660.55Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC05803E11SK FerrChloL1 Citrus clementina cDNA clone C05803E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296855 ID=CX296855; Name=CX296855; organism=Citrus clementina; type=EST; length=694bp
AAGTGCAACCATCATGTGCTAACCATTAACAAACTCAATTCATAATACAG
TCAACAAAAAAGCTTAAATATTGTATATGGCAACCACAAGAATGAAAGCA
GCCAACATAACCAGGATTGGTCTCAATTTAACTCAATACTTCATAACAGT
TCACCAACAAGGAGTAACCATAAATAAGGAAATAGGGATAGGGATAGGGA
TAAGTCTAACTGCAGGAACAATTAGGCTCCTCAACCAAACATTAGTTTAC
TCATAGATCCAAGGGTGAAGGCTGCTCTGCCAGTTAATAGGGCCATCAGG
GAACCACAAGGCGATTTCTTTCTGGGCACTCTCAACTGAGTCACTTCCAT
GGATGATATTCCCGTCACGATAGCCAAATCACCACGGATGGTTCCAGGAG
CAGACTGCGCAGGGTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACA
ACACCTTCACCCTCCCAAATCATAGCAACAACAGGACCAGAGGTAATGTA
CTCAATCAGAGAACCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCT
TCTCAGCAAAAGGGCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAG
AAACCCTTCTTCTCAAATCTGATGATGATTTCACCAACAAGGCCTCTTTG
GACCCCATCGGGCTTGATCATGATGAAAGTTTGTTCCATTTCTT
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