CX296857

Overview
NameCX296857
Unique NameCX296857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3319 contig Ccv1_Contig3319:281..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: SFC1_YEAST (Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae GN=SFC1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 46/162 (28.40%), Postives = 73/162 (45.06%), Query Frame = 2 
Query:  221 AKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLAC-PTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEG 703
            A +L +G   G  + +C HP DTIKV++Q        +  K  G +   +     EG   LYKG+GA +  +    A+ F+       LL ++    ++     + G GAG+  + L   P E++K RLQAQ         G   KY   +  A  +++ EG
Sbjct:   11 AINLMAGGTAGLFEALCCHPLDTIKVRMQIYRRVAGIEHVKPPGFIKTGRTIYQKEGFLALYKGLGAVVIGIIPKMAIRFSSYEFYRTLLVNKESGIVSTGNTFVAGVGAGITEAVLVVNPMEVVKIRLQAQHLTPSEPNAG--PKYNNAIHAAYTIVKEEG 170
The following BLAST results are available for this feature:
BLAST of CX296857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SFC1_YEAST6.762e-1128.40Succinate/fumarate mitochondrial transporter OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionC05803F01SK FerrChloL1 Citrus clementina cDNA clone C05803F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296857 ID=CX296857; Name=CX296857; organism=Citrus clementina; type=EST; length=721bp
CATTAAAAAGTAAACCCGAAGAAAAAATCAGAAAAATAAAACCCAGTTCC
TTTTTCCTGGCGTTTTTTTAATTTGTATACCCTCCTTTTAATCTAATACT
TTGTGTTTTCTCAAATTGAATCATTTGAGGGAAACAACTTTTCTCCACTA
GATTCGGTTGCCGTTCTCGGGGCTCTGCTTACTCCGGTGTCAGTGAGAAT
CGGCTCTGATGGGAGACATAGCCAAGGATCTATTTTCTGGGACTGTTGGA
GGGGCAGCACAATTAATATGTGGGCACCCATTTGATACCATCAAGGTCAA
GCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCAACCTCCCAAGTATGCTG
GTGCCATGGATGCTGTCAAGCAAACCATAGCTGCCGAAGGGCCAAGGGGC
TTGTACAAAGGTATGGGAGCTCCACTAGCTACTGTTGCCGCTTTTAATGC
CCTCCTATTTACAGTGAGAGGACAAATGGAGGCACTGCTCAGATCTCAAC
CTGGTGCCCCACTAACCGTCAACCAGCAGATTATTTGCGGGGCTGGGGCT
GGTGTTGCTGTTTCTTTTCTTGCTTGCCCCACAGAATTGATCAAATGCAG
GTTGCAAGCCCAAAGTGCATTAGCAGGTTCTGGCCAAGTTGGTGTGGCAG
TGAAGTATGGTGGACCAGTGGATGTGGCTAAGCGTGTTCTTAGATCAGAA
GGCGGTCTTAGGGGTCTCTTC
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