CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOV_BOVIN (Rho-related GTP-binding protein RhoV OS=Bos taurus GN=Rhov PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 86/172 (50.00%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED +RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+A
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDLDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSA 201          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 83/168 (49.40%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +K V VGDGAVGKTCLLISY   TFPTDY+PT+F+N+  N+   NG  + L LWDTAGQE+Y+RLRPLSY  ADV ++ +S+ SK S +NV   W PE+KH+ P  PI+LVG K DL +          +  +  +  E L K +GA A+I+CS++ ++N+  VF+ A
Sbjct:   73 LKIVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFCPSTPIMLVGLKSDLYEADNL------SDLVEPSSAESLAKRLGAFAHIQCSARLKENIDEVFETA 234          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.907e-42
Identity = 83/168 (49.40%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  + V ++ F++ S  S +NV +KWI E+ H+   +PI+LV  K DLR+D +    +      P++T +G+ + + IGA  Y+ECS+KT + V+ VF++A
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESA 175          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.974e-41
Identity = 82/168 (48.81%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  + L LWDTAGQEDY+RLRPLSY  + V ++ FS+ +  S +NV +KWI E+ H+   +PI+LVG K+DLR+D +    +      PI+  +G+ + + IGA  Y+ECS+K  + V  VF+ A
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETA 175          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.222e-40
Identity = 82/167 (49.10%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD-KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P +PIILVG K    D+  +  +      P+     +E+   I A  Y+ECS+KT++ V+ VF+ A
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAGDEHTRRELAKMKQEPVKPDDAKEMGSRIKAFGYLECSAKTKEGVREVFELA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACL_DICDI (Rho-related protein racL OS=Dictyostelium discoideum GN=racL PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.103e-39
Identity = 87/172 (50.58%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            ++IK V  GDGAVGKT LLI++ S  FP DY PTVFDNFS   +      NLGL+DTAGQED++RLRPL Y   D+F++ +S+I+  SY NV  KW  E+K Y    +P+ILVGT+ DLR DK  +  +      PIS  +G  +RK IGA A+ ECS  + +NVK VF+ A
Sbjct:    2 QYIKMVICGDGAVGKTSLLIAFASGEFPRDYQPTVFDNFSTLYMFQNKAYNLGLFDTAGQEDFDRLRPLGYNDTDLFLICYSVINPPSYANVYDKWYSEIKLYTGSEIPLILVGTQNDLRHDKATRETLALKQQAPISYEEGMMMRKRIGAKAFTECSVVSGKNVKQVFEEA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.881e-39
Identity = 80/169 (47.34%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IK   VG+G +GKT +L+SYTSN+   +Y PTVFDN+S  ++ N    NL LWDTAGQE++++LR LSY   DVF+L FSLI+ +S+ N+   W+ EL    P  PI+LVGT++DL+ +      +     +PIST QG EL K I A  ++ECS+ TQ+N+  VF+ A
Sbjct:    4 IKVCVVGEGGIGKTSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGTQMDLKSNSVILDRLCEKKQLPISTQQGIELSKKINAFDFVECSALTQKNLHLVFEKA 172          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CRL1_CANAL (GTP-binding RHO-like protein OS=Candida albicans GN=CRL1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 84/168 (50.00%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +K V VGDG  GKTCLL++YT N FP+ YVPTVF+N+   V   NG TV L LWDTAGQE+Y+RLRPLSY   D+ ++ F++ ++ S ENV   W PE+ HY PG+PIILVGTK DL  D    ++H  ++ ++        K IGA   I  S+KT  NV+ VF+ A
Sbjct:   76 MKIVVVGDGGCGKTCLLLAYTQNKFPSIYVPTVFENYVTAVQSPNGKTVELALWDTAGQEEYDRLRPLSYPDVDILLVCFAVDNEVSLENVKDMWFPEVNHYCPGIPIILVGTKSDLLSD----MNHDASIRVA--------KEIGAIGLIFTSAKTMFNVRTVFNFA 231          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOD_MOUSE (Rho-related GTP-binding protein RhoD OS=Mus musculus GN=Rhod PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 75/169 (44.38%), Postives = 111/169 (65.68%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +K V VGDG  GKT L++ +    FP  Y PTVF+ ++A + + G  V+L +WDTAGQ+DY+RLRPL Y  A+V +L F + +  S++NVS +W PE+ H+  GVPII+VG K+DLR DK     +      P++  +G ++ + +GA AY+ECS++   NV+AVF  A
Sbjct:   18 VKVVLVGDGGCGKTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPEVTHFCKGVPIIVVGCKIDLRKDKVLVNNLRKKRLEPVTYHRGHDMARSVGAVAYLECSARLHDNVEAVFQEA 186          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 77/171 (45.03%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            R +K V VGDG  GKT LL+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K DL  DK     +   G  P++  +G+E+ + +GA AY+ECS++   NV AVF  A
Sbjct:   16 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLCKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 186          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOV_BOVIN8.159e-4350.00Rho-related GTP-binding protein RhoV OS=Bos taurus... [more]
RHO4_YEAST3.100e-4249.40GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]
RHO1_SCHPO6.907e-4249.40GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RHO5_SCHPO9.974e-4148.81GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RHO_DISOM2.222e-4049.10Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
RACL_DICDI1.103e-3950.58Rho-related protein racL OS=Dictyostelium discoide... [more]
RACG_DICDI1.881e-3947.34Rho-related protein racG OS=Dictyostelium discoide... [more]
CRL1_CANAL4.190e-3950.00GTP-binding RHO-like protein OS=Candida albicans G... [more]
RHOD_MOUSE5.473e-3944.38Rho-related GTP-binding protein RhoD OS=Mus muscul... [more]
RHOD_HUMAN5.473e-3945.03Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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