CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO5_YEAST (GTP-binding protein RHO5 OS=Saccharomyces cerevisiae GN=RHO5 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.148e-39
Identity = 91/212 (42.92%), Postives = 119/212 (56.13%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN------------------------------LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----------PGVPIILVGTKLDLRDD--KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            R IKCV +GDGAVGKT LLISYT+N+FPTDYVPTVFDN+S  + +   T +                              + LWDTAGQEDY+RLRPL Y   D+F++ FS+   AS+ NV++KW+PELK  +              PI+LVGTK DLRDD   Q  +    +  +S  + +EL +  G   Y ECS+ TQ  V+ VF+ A
Sbjct:    2 RSIKCVIIGDGAVGKTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGSLSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASFANVTEKWLPELKQTSNIEGTSLYTKLGKYPILLVGTKSDLRDDPATQKKLQEANSDYVSQEEIDELVQRCGFMGYTECSAATQAGVREVFEQA 213          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.219e-38
Identity = 80/170 (47.06%), Postives = 108/170 (63.53%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDG  GKTCLLI ++S TFP  YVPTVF+N+  ++    N   + L LWDTAGQE+Y+RLRPLSY  ++V +L FS+   AS  NV++KW PE++H+ P  PI+LVG K DLR D+     +   G  P++  Q + +   + AP Y+ECS+K    V  VF  A
Sbjct:   16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAP-YVECSAKENTGVNEVFQLA 184          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37
Identity = 82/170 (48.24%), Postives = 107/170 (62.94%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDG  GKTCLLISY+   FP  YVPTVF+N+    +   +G TV L LWDTAGQE+Y+RLRPLSY   D+  + F++   AS ENV  KW PE+ H+ P  PIILVG K DLR+ +     +   G  P++  QG+ +   + A +Y+ECSSK  + V +VF  A
Sbjct:   71 KFVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKSDLRNKRTCIELLKTQGLTPVTPEQGQAVAGRMNA-SYVECSSKEMRGVDSVFQLA 239          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_COLGL (Cell division control protein 42 homolog OS=Colletotrichum gloeosporioides GN=CDC42 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 82/167 (49.10%), Postives = 109/167 (65.27%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+ S AS+ENV++          PGV +++V    +     +  +      P+    GE + K +GA  Y+ECS+ TQ  +K VFD A
Sbjct:    6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVARSGSRGTSP-LPGV-LLIVAPVTERGSSVREKLSKQKMSPVRKEDGERMAKDLGAVKYVECSALTQFKLKDVFDEA 170          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.299e-37
Identity = 76/174 (43.68%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            S  + +K V VGDG  GKT LL+ Y+  +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE+ H+  G+P++L+G K DLR DK+       A   PI+  QG+   + I A  Y+ECS+K ++NV+ VF  A
Sbjct:   19 SGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGQSACEQIRAALYLECSAKFRENVEDVFREA 192          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 84/175 (48.00%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP---------ISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            K V VGDGA GKT LL  +T   FPT+YVPTVF+N+ ++  V+G +V L LWDTAGQE+Y RLRP+SY  A + ++ F++ S  S ENVS KWI E+    P VP ILVG K DLR D       P A+          + + Q E + + IGA  Y+ECSS T   V  VF+AA
Sbjct:   10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSD-------PVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAA 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36
Identity = 75/169 (44.38%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +K V VGDG  GKT LL+ Y+  +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE+ H+  G+P++L+G K DLR DK+       A   PI+  QG    + I A  Y+ECS+K ++NV+ VF  A
Sbjct:   20 LKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFRENVEDVFREA 188          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 75/174 (43.10%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            SA + +K V VGDG  GKT LL+ Y   +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + ++ + +++  SY+NV  KW PE+ H+  G+P +L+G K DLR DK+       A   PI+  QG    + +    Y+ECS+K ++NV+ VF  A
Sbjct:   15 SARKELKIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGLNACEQMRGALYLECSAKFRENVEDVFREA 188          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACM_DICDI (Rho-related protein racM OS=Dictyostelium discoideum GN=racM PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.301e-34
Identity = 75/170 (44.12%), Postives = 104/170 (61.18%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYT-SNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD-----DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            IK VT+GD  VGKT LL++YT S +FP +YVPT  DNF     +NG   +L +WDTAG E Y+ LRPL Y   D+ +L F++ ++ S+ ++   WI E+  Y PG+PIILVGTK+DLRD     DK  F+ +         +G  L K IGA  + ECSS+    ++ +F
Sbjct:    6 IKIVTIGDYGVGKTTLLMTYTASGSFPQEYVPTALDNFIHEATINGKKASLSIWDTAGGEYYHELRPLIYPETDILLLLFAIENRESFLHIKTNWITEINQYIPGIPIILVGTKIDLRDSDLIKDKSNFVKY--------KEGLALSKEIGASHFCECSSRMNLGLEELF 167          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHO4_ASHGO (GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO4 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34
Identity = 71/168 (42.26%), Postives = 107/168 (63.69%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IK V VGDGA GKT LL+SYT   FP DYVPT+F+N+  N+    G  + L LWDTAGQE+Y+RLRPLSY   D+ ++ ++  ++ S  N  + W PE++H+ P  P++LVG K DL     + +D    + +     E + + +GA  +++CS+KT+Q ++ VF+ A
Sbjct:   53 IKIVVVGDGATGKTSLLMSYTQGQFPEDYVPTIFENYVTNIEGPRGKVIELALWDTAGQEEYSRLRPLSYGDVDIVMVCYAADNRTSLTNAEELWFPEVRHFCPHAPMMLVGLKSDL-----YSLDALDRL-VDPTDAELVARKMGAFVHLQCSAKTRQCLEDVFNTA 214          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO5_YEAST7.148e-3942.92GTP-binding protein RHO5 OS=Saccharomyces cerevisi... [more]
RHO4_SCHPO1.219e-3847.06GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RHOC_EMENI1.032e-3748.24GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
CDC42_COLGL1.761e-3749.10Cell division control protein 42 homolog OS=Collet... [more]
RHOF_BOVIN2.299e-3743.68Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]
RHO2_SCHPO1.141e-3648.00GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RHOF_HUMAN1.947e-3644.38Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]
RHOF_MOUSE5.664e-3643.10Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]
RACM_DICDI5.301e-3444.12Rho-related protein racM OS=Dictyostelium discoide... [more]
RHO4_ASHGO6.923e-3442.26GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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