CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  216 GAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 671
            G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+L F++ +  S+E++S  ++ I  +K  A  VP++LVG K DL               +  +Q  E+ +  G P ++E S+KT+  V
Sbjct:    1 GGVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKD-AEEVPMVLVGNKCDL-----------PTRAVDMSQAREVARQYGIP-FVETSAKTRMGV 141          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACJ_DICDI (Rho-related protein racJ OS=Dictyostelium discoideum GN=racJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVP---TVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            +K   +GD  VGK+C++ SY+S    T         + +++ +V  N   + L L     Q +  R++ + +   DVF++ FS+ SKASY+N+ +KW  E++   P   IILVGTK+DLR +            ++   G E  K I A  Y+ECS+ T + VK VFD
Sbjct:   10 VKIFCLGDDGVGKSCVMNSYSSGGPLTSLFQGSELTWTDYTVSVTHNQKPLKLRLV-IGDQNELRRIKQIEFN--DVFLICFSVDSKASYDNI-EKWNTEIRKILPTPNIILVGTKIDLRKEG----GELKKSIVTQEMGIEKAKEINAIKYMECSTATYEGVKEVFD 169          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 47/166 (28.31%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            IK + +GD  VGK+CLL+ ++ ++F   ++ T+  +F    + + G  + L +WDTAGQE +  +    YRGA   +L + +  + S+ N+ + WI  + +H    V  +L+G K D+ + K           + +++G+ L    G   ++E S+K   NV+  F
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNI-RNWIRNIEQHATDSVNKMLIGNKCDMAEKK----------VVDSSRGKSLADEYGI-KFLETSAKNSINVEEAF 169          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V I+ + + +K S+ N + KWI ++++     V I+LVG K DL D +Q          +S  +GE   K      + E S+K   N+KA+F
Sbjct:    8 KLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTN-TIKWIEDVRNERGNNVVIMLVGNKTDLADKRQ----------VSIEEGEAKAKEYDI-MFTETSAKAGFNIKALF 160          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IS  QGE+  + I    + E S+K   NV  +F
Sbjct:   42 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 196          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            K V VG G VGK+ L I +  + F +DY PT+ D+++    V+G    L + DTAGQE++  +R    R  + F+L F++  + S+  V K +   L+       PI+LVG K DL + +Q       +   S               Y E S+K + NV   F+
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLENQRQVLRSEASSFSASHHM-----------TYFEASAKLRLNVDEAFE 184          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 50/164 (30.49%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  198 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            CV +GDG VGKT + I + SN F   Y PT+ D +    +++     L + DTAGQ++ N +R    +  + FIL +S+ S++S++ + + ++ ++K   +  VPII++  K DL D++Q          ++  +GE      G  +++E S+K + N+  VF+
Sbjct:   18 CV-MGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQI-QSFLDQIKFLKSEKVPIIMIANKSDLDDERQ----------VTYQEGENFANRFGM-SFMEVSAKYKLNIDEVFN 168          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 50/168 (29.76%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+G    L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 50/168 (29.76%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+G    L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 554
            +K + +G  +VGK+CLL  +  N F +    T+  +FS+ VV + G  V L +WDTAGQE +  +    YRG+    L + + ++ SY +++  W+ ++K  A P V IILVG K DL + ++
Sbjct:    8 VKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHIT-NWLSDVKSLASPDVTIILVGNKADLTEQRE 129          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_ARTSA1.894e-1533.77Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RACJ_DICDI1.894e-1533.93Rho-related protein racJ OS=Dictyostelium discoide... [more]
RAB8A_DICDI1.894e-1528.31Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB6_DICDI1.894e-1534.55Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB12_MOUSE1.894e-1531.33Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RRAS_MOUSE2.474e-1530.91Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RASU_DICDI2.474e-1530.49Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAP1B_XENTR2.474e-1529.76Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA2.474e-1529.76Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RAB4_DICDI2.474e-1535.77Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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