CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V VG G VGK+ L I +  + F  +Y PT+ D++    +++     L + DTAGQE+Y  +R    R  + F+L +S+ S+ S+E +S   + I  +K      P+I+V  K DL  ++Q          +   +G +L K  G   +IE S+K + NV   F
Sbjct:    9 REYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKD-QDSFPVIVVANKCDLEYERQ----------VGMNEGRDLAKHFGC-KFIETSAKQRINVDEAF 164          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 51/166 (30.72%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++          I+  QGE+  + I    + E S+K   NV  +F
Sbjct:   43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 197          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENV ++W+ EL+ +A   + I+LVG K DL+        H   V    AQ    R+ +   ++IE S+    NV+  F
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENV-ERWLKELRDHADSNIVIMLVGNKSDLK--------HLRDVQTEVAQAFCEREGL---SFIETSALESTNVEKAF 166          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 52/172 (30.23%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTV-NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            +K + +GD  VGKT L+  Y ++ +   Y  T+  +F +  V V+G  V  + +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K+D  + K+          +S    +EL K +G       S+K   NV   F+
Sbjct:    9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  180 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDL-RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            + + +K +T+GD  VGKT +  ++ +  +  +        +S  + +    V L +WDT  QE +N L P+ YR ++ + L F + ++ S++N+ K W+ E + +  G VP +L+GTK D+ R DK    +          +  E + +I    Y E S+K  QN+   ++AA
Sbjct:    2 SKKSLKIITLGDSYVGKTSVFNNFVTGKYEINECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDK-WMDEARKFCIGKVPFVLIGTKKDIPRTDKSISKERIE----QWCKNIEDQGIIDRVHYFETSAKFSQNITESYNAA 169          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S+   S KWI +++      V I+LVG K DL D +Q          ++T +GE   K +    +IE S+K   NVK +F
Sbjct:   12 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VTTDEGERKAKELNV-MFIETSAKAGYNVKQLF 164          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB34_PIG (Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 58/166 (34.94%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K + VGD +VGKTCL+  +  +TF  +Y  T+  +F      V G   +L LWDTAGQE +  +    YRGA   I+ F+L   AS E+ +K+W+ + LK   P  V + LVG+K DL    Q+ +    A+ ++     E         Y   SS T +NV+  F
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYVLMEKDALKVAHEMKAE---------YWAVSSLTGENVREFF 209          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASL_COPCI4.220e-1531.5524 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RAB3B_MOUSE4.220e-1531.33Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU4.220e-1531.33Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN4.220e-1531.33Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB12_HUMAN4.220e-1530.72Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
YPTC6_CHLRE5.511e-1533.33Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT7_YEAST5.511e-1530.23GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
RABM_DICDI5.511e-1528.32Ras-related protein RabM OS=Dictyostelium discoide... [more]
RAB6B_CAEEL5.511e-1533.33Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RAB34_PIG5.511e-1534.94Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 ... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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