CX296866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 689 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 689 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 689 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 689 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 689 K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL + + AV AQ + ++E S+KT NV +F A Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3 Query: 195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683 K + VGD +VGKTCL+ + +TF +Y T+ +F V G +L LWDTAGQE + + YRGA I+ F+L AS E+ +K+W+ + LK P V + LVG+K DL Q+ + A+ ++ +E++ Y SS T +NV+ F Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEH-TKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVA----QEIK-----AEYWAVSSLTGENVREFF 209
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 52/170 (30.59%), Postives = 91/170 (53.53%), Query Frame = 3 Query: 180 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683 A R +K +GD VGK+ ++ + + F + PT+ +F V G+ ++ L WDTAGQE ++ L P+ YRG+ ++ + + + S+ + KKW+ ELK + P + + + G K DL D ++ VP+ A +E + IGA +E S+K N++ +F Sbjct: 2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELF 159
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683 ++ + +G VGKT L+ +T +TF TV +F V + G + L +WDTAGQE +N + YR A IL + + K +++++ KW+ + YA ++LVG KLD D++ I+ QGE+ I + E S+K NV +F Sbjct: 7 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAHEITGMRFCEASAKDNFNVDEIF 161
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15 Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 3 Query: 171 KMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683 K + K + +GD VGKTC+L ++ + F T ++ T+ +F V + G + L +WDTAGQE ++ + YRGA +L + + + S+EN+S KW+ + +H V +L+ K D+ DH VP +GE++ + + E S+K N++ F Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDQHANEDVERMLLRNKCDM--------DHKRVVP--KGKGEQIAR-EHRIRFFETSAKANINIEKAF 163
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14 Identity = 56/178 (31.46%), Postives = 82/178 (46.07%), Query Frame = 3 Query: 192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686 IK + +GD VGKT +L YT F + ++ TV +F VV G ++L LWDTAGQE + L +R A F+L F L ++ S+ NV + WI +L+ Y I+L G K DL D + + + EL + G P Y E S+ N+ + Sbjct: 10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISQAIE 175 The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bpback to top |