CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  183 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL   +           ++  + ++  +  G   ++E S+KT +NV+  F
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 165          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  183 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL   +           ++  + ++  +  G   ++E S+KT +NV+  F
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 165          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  183 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL   +           ++  + ++  +  G   ++E S+KT +NV+  F
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 165          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G+ +VGKT L+  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V I+ + + +  S+ N ++KWI +++      V I+LVG K DL D +Q          ++  +GE+  K +    ++E S+K   NVK +F
Sbjct:   10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQ----------VTQEEGEKKAKELKI-MHMETSAKAGHNVKLLF 165          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 671
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +   +  EL +  G P Y E S+    N+
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNI 170          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V VG G VGK+ L I +  + F  +Y PT+ D++    V++     L + DTAGQE+Y  +R    R  + F+L +S+ S+ S+E +S   + I  +K      P+++V  K DL  ++Q          +   +G +L +  G   ++E S+K + NV   F
Sbjct:    9 REYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKD-QDTFPVVVVANKCDLEYERQ----------VGMNEGRDLARHFGC-KFVETSAKVRINVDQAF 164          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y N    W+ + +  A P + IIL G K DL  D++  F++         AQ  EL        ++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAF 162          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 47/168 (27.98%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + ++G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  + + W+ EL+ Y     ++  LVG K+D +D+++  +D    +  +            +  +IE S+KT+  V+  F+
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKL-ENWLNELETYCTRNDLVKMLVGNKID-KDNRE--VDRNEGLKFARKH---------SMLFIEASAKTRDGVQCAFE 163          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 47/167 (28.14%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            +KC+  G   VGK+ LL+ +    F  +   T+   F   +++++ S + L +WDTAGQE +  +    YRGA + +L + +  + S++ +S  W+ E++   +P + I L+G K D +D +           I+T +G +  K      + E S+K  ++V++VFD
Sbjct:    6 LKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLS-GWMDEVRQMSSPNIVIALIGNKCDCKDKR----------VITTEEGAKNAK-ENDILFFETSAKDYESVESVFD 160          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            +A +  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + +   T+ L LWDTAGQE +  L P   R + V ++ + + +  S+   + KW+ ++++     V I+LVG K DL D +Q          +ST  GE+  + +    +IE S+K   NVK +F
Sbjct:    7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTT-KWVDDVRNERGCDVIIVLVGNKTDLADKRQ----------VSTEDGEKKARDLNV-MFIETSAKAGYNVKQLF 165          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_MOUSE1.228e-1428.40Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.228e-1428.40Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.228e-1428.40Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RYH1_SCHPO1.603e-1432.74GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RB27A_MOUSE1.603e-1432.37Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAS_LENED1.603e-1430.36Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAB4B_DANRE1.603e-1433.73Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RB18B_DANRE2.094e-1427.98Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RABQ_DICDI2.094e-1428.14Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB6A_CAEEL2.094e-1430.41Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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