CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:5..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 93/169 (55.03%), Postives = 128/169 (75.74%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD A
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.140e-51
Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +KCV VGDGAVGKTCLLISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S  S+ENV +KW PE+ H+ PGVP ++VGT++DLR++K     +      PI+  QGE+  + + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSALTQRGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.063e-50
Identity = 97/169 (57.40%), Postives = 121/169 (71.60%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IK V VGDGAVGKTCLLI YT+N FP DY+PTVFDN+  ++      + L LWDTAGQE+Y++LRPLSY  A +F++ FS+ S  SY+NV  KW PE+ H+AP VPIILVGTKLD R+D      +   G   I+TA+GEEL+  I A  YIECS+KT +N+K VFD A
Sbjct:    8 IKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEA 176
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.389e-50
Identity = 95/169 (56.21%), Postives = 125/169 (73.96%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS+ENV +KW+PE+ H+    P +LVGT++DLRDD      +      P+ST  GE+L K + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEKLAKNKQKPVSTDVGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.813e-50
Identity = 94/169 (55.62%), Postives = 126/169 (74.56%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++     +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.368e-50
Identity = 94/169 (55.62%), Postives = 125/169 (73.96%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.368e-50
Identity = 94/169 (55.62%), Postives = 125/169 (73.96%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.093e-50
Identity = 94/169 (55.62%), Postives = 125/169 (73.96%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_MOUSE3.654e-5155.03Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
CDC42_ASHGO8.140e-5155.03Cell division control protein 42 OS=Ashbya gossypi... [more]
RACC_ENTHI1.063e-5057.40Rho-related protein racC OS=Entamoeba histolytica ... [more]
CDC42_CAEEL1.389e-5056.21Cell division control protein 42 homolog OS=Caenor... [more]
CDC42_AEDAE1.813e-5055.62Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_DROME2.368e-5055.62Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ANOGA2.368e-5055.62Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_DROPS3.093e-5055.62Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
CDC42_RAT9.000e-5055.03Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG9.000e-5055.03Cell division control protein 42 homolog OS=Sus sc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
back to top