CX296878

Overview
NameCX296878
Unique NameCX296878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig722 contig Ccv1_Contig722:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749
            +FA+LYV KW+ L++PP T+++VN++ I  G++  + S +  W  L G +FF+ WV+ HLYPF KGL+GR+ R PTIV VWS LL+ I SLLWV ++P
Sbjct: 1071 EFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINP 1168          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.241e-26
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = -1
Query:  456 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 746
            FA+LY+ KWT L I P T++IVNLV IV G S  I S    WG L G +FF++WV+ H+YPF KGL+GR+ + PTIV VWS L++   SLLW+ + P
Sbjct:  928 FADLYIVKWTGLFIMPLTIIIVNLVAIVIGASRTIYSVIPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISP 1024          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = -1
Query:  456 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 746
            FAELY  +W+ L++PP T+++VN V I    +  + S +  W  L G  FF+ WV+ HLYPF KGLLGR+ R PTIV VWS L++ I SLLWV ++P
Sbjct: 1103 FAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  411 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 746
            +A+LY+ KW+SL+IPP  + +VN++ IV      I      W  L G  FF+ WV+AHLYPF KGL+GR+ +TPTIV VW+ L+A   SLLW  ++P T     A   G  G
Sbjct:  996 YADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGG 1107          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = -1
Query:  420 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG 746
            +A+LY+ KW+SLLIPP T+ +VN++ I    +  I S    WG   G  FF+ WV+AHL PF KGL+GR+ +TPTIV VWS LL+   SLLWV + P      +ANSNG
Sbjct: 1034 YADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP-----PEANSNG 1137          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.472e-24
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = -1
Query:  432 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 746
            FAELY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  904 FAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.472e-24
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = -1
Query:  432 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 746
            FAELY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  904 FAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.963e-24
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = -1
Query:  462 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 749
            +FA+LY+FKWT+L+IPP T++I+N+V I+  V   + S    W  L G  FFA WV+ H+YPF KGL+GR  +TPT+V VWS L+A   SLL++ +
Sbjct:  871 EFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = -1
Query:  447 KWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY-QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRT-PTIVIVWSILLASIFSLLWVRVDPFTS 725
            +WT+LL+ PT+V++ NL G+VA V++ ++ GY QSWG L  KL  A WV+AHL  FL+GLL  ++R  PTI ++WS++  S+ SLLWV    F++
Sbjct:  754 RWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSA 848          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 34/95 (35.79%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  462 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 746
            +A+LYV +WT L+I P  +++VN++G     +  ++  +  W  + G +FF  WV+ HLYPF KG+LG+  +TP +V+VW      I ++L++ +
Sbjct:  824 YADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 918          
The following BLAST results are available for this feature:
BLAST of CX296878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CSLD5_ARATH2.145e-2651.02Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD1_ARATH6.241e-2653.61Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD4_ORYSJ1.177e-2450.52Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD4_ARATH1.537e-2445.54Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ORYSJ1.537e-2450.46Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD5_ORYSJ4.472e-2449.52Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI4.472e-2449.52Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD6_ARATH9.963e-2450.00Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESAB_ORYSJ1.759e-2048.42Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ2.012e-1635.79Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803G11SK FerrChloL1 Citrus clementina cDNA clone C05803G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296878 ID=CX296878; Name=CX296878; organism=Citrus clementina; type=EST; length=758bp
TTTACTGCAGAATGGAACATTTCTTTTTTTTTTTCACAAACAGAGGATTA
CATTGTTTCTTAGCGCTCTGAACTTGAGAAAATGGAGCTTCACAATTTAG
GTCCAACACAACTAAACAAGTAGGGACCAACACCAAGCACCTGTATGGAA
GTTACAAAACGATATAAGAATAAATATTAAATAAGATACAAAAAGGGTTT
TACTAAAGCCTTAAGTCCTCCTTAGTAGGCTCCACGACAAATGAAAAGAT
CCCATATCATCAATCTCCTTTCTCCAGACCGACGAGAAGTAAATTAACTT
ACGATCATTTCCCAATGACATAATTTCTTCTTATATACACTGATGAGAGC
TTGAAGGAAGAATGGCATTTGAGGCCACAAATAATCATCCAACATGCACT
AGCAATTGATGCCACATTGACCGTTTGAATTGGCTTTGGTGTCATCAGAG
GTAAAGGGATCAACACGCACCCACAGCAAGGAGAAAATGGAAGCAAGTAG
GATAGACCACACAATGACAATTGTTGGTGTGCGGTTTTGACGACCCAACA
GACCCTTCAGGAAAGGATACAGATGGGCAATGACCCATATGGCAAAGAAT
AGCTTGCCAAAGAGTGGACCCCATGATTGGTAACCACTGTTTATGGCCCA
TGATACACCAGCTACAATACCCACCAAGTTCACAATCAGGACTGTAGTTG
GAGGGATGAGAAGAGATGTCCATTTGAATACATAAAGCTCTGCAAAATCT
CATCATCA
back to top