CX296885

Overview
NameCX296885
Unique NameCX296885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14514 contig Ccv1_Contig14514:197..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = -1
Query:  344 GPPLPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHS--VDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHED 619
            G  +PA+++++VN+W    +P +W +PE F PERF++    V+  G +F Y+PFG GRR CPG+   L  + +T+  L+ + E   P G    D
Sbjct:  388 GFDIPAESKILVNAWWLPNNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVELLPPPGQSKID 481          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.888e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = -1
Query:  275 GRDPMYWTEPESFIPERFI--DHSVDYKGTN-FEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVRRKQDLCMIPIP 568
            GRDP+ W EP +F PERF+  + +VD  G+   + +PFGAGRRICPG+   +  +E  +A ++  F+WK   G    ++D+TE    TV  K  L  + +P
Sbjct:  405 GRDPVEWEEPMAFKPERFMGEEEAVDLTGSRGIKMMPFGAGRRICPGIGLAMLHLEYYVANMVREFQWKEVQG---HEVDLTEKLEFTVVMKHPLKALAVP 502          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: C71AS_ARATH (Putative cytochrome P450 71A28 OS=Arabidopsis thaliana GN=CYP71A28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  323 VIVNSWATGRDPMYWTE-PESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKL-------PNGMKHEDLDMTEAF 592
            V +N+WA  RD   W    E F PER +D  ++++G +F +IPFG+GRR+CP + F    +E+ LA  +Y F W++        +G+K   +++   F
Sbjct:  378 VFINAWAIHRDTEKWGPYAEEFKPERHLDLPLNFQGQDFNFIPFGSGRRLCPDIDFATMLIEVGLANFVYRFNWRVETRPLGDDDGLKQTGMEVCHKF 475          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  371 LPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWK 610
            +P    V++ S+A  RDP YWTEPE F+PERF   + D     + Y PFG+G R C GM F L +++L L  +L +F +K
Sbjct:  388 IPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD-NIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 42/112 (37.50%), Postives = 55/112 (49.11%), Query Frame = -1
Query:  293 GPPLPAKARVIVNSWATGRDPMYWTEPESFIPERFID--HSVDYKG-TNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVRRKQDL 619
            G  +P  A V V + A   DP  W  PE F PERFI      D  G T  + +PFG GRRICPG++     + L +A ++  FEW      K   +D T  +  TV  K+ L
Sbjct:  390 GYDIPIDANVEVYTPAIAEDPKNWLNPEKFDPERFISGGEEADITGVTGVKMMPFGVGRRICPGLAMATVHIHLMMARMVQEFEWGAYPPEK--KMDFTGKWEFTVVMKESL 499          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  371 LPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWK 610
            +P    V+V  +A   DP YWTEPE F PERF   + D     + YIPFGAG R C GM F L +++L +   L +F +K
Sbjct:  388 IPKGLAVMVPIYALHHDPKYWTEPEKFCPERFSKKNKDSIDL-YRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSFK 466          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: C81D1_ARATH (Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 38/100 (38.00%), Postives = 50/100 (50.00%), Query Frame = -1
Query:  311 LPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATV 610
            +P    ++VN+WA  RDP  W +P+SF PERF       K      + FG GRR CPG       V L L  L+  FEW+    +   ++DM E  G TV
Sbjct:  390 MPRGTTLLVNAWAIHRDPNTWDDPDSFKPERFEKEEEAQK-----LLAFGLGRRACPGSGLAQRIVGLALGSLIQCFEWERVGNV---EVDMKEGVGNTV 481          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 42/112 (37.50%), Postives = 53/112 (47.32%), Query Frame = -1
Query:  293 GPPLPAKARVIVNSWATGRDPMYWTEPESFIPERFI--DHSVDYKGTN-FEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVRRKQDL 619
            G  +P    V +       DP  W+EPE F P+RF       D  G +  + IPFG GRRICPG++     V L LA L+  FEW  P   +   +D TE    TV  K  L
Sbjct:  395 GYDIPTGVNVEIFLPGISDDPNLWSEPEKFDPDRFYLGKEDADITGVSGVKMIPFGMGRRICPGLNMATVHVSLMLARLVQEFEWADPENTR---VDFTEKLEFTVVMKNTL 503          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = -1
Query:  371 LPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWK 610
            +P    V++ S+A   DP YWTEPE F+PERF  ++ D     + Y PFG G R C GM F L +++L L  +L +F +K
Sbjct:  388 IPKGVVVMIPSYALHYDPKYWTEPEKFLPERFSKNNKD-NIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CX296885 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = -1
Query:  368 GPPLPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKL 619
            G  +P    V++ ++A  RDP +WTEP+ F PERF   + D     + Y PFGAG R C GM F L +++L L  L+ +F +KL
Sbjct:  383 GTFIPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKKNKDNINP-YIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKL 465          
The following BLAST results are available for this feature:
BLAST of CX296885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
TCMO_MEDSA3.804e-1437.23Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
C89A2_ARATH1.888e-1339.60Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
C71AS_ARATH9.370e-1334.69Putative cytochrome P450 71A28 OS=Arabidopsis thal... [more]
CP3A4_HUMAN1.353e-1143.75Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
C77A3_SOYBN2.308e-1137.50Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=... [more]
CP343_HUMAN3.014e-1143.75Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
C81D1_ARATH3.937e-1138.00Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CY... [more]
C77A2_SOLME3.937e-1137.50Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
CP3AL_CALJA6.715e-1142.50Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP3A6_RABIT6.715e-1141.67Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionC05803H06SK FerrChloL1 Citrus clementina cDNA clone C05803H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296885 ID=CX296885; Name=CX296885; organism=Citrus clementina; type=EST; length=622bp
TTTATTATCAAATACACACATAATGTGTGGTGAATTATTTCTTATATACA
AGTGCTGAAGCTCAGCTTGATTACTGTTATTAGTCACTAAACTATTAACA
AACTATATTAAGCTGAACATAACAACTTTAACTAATCAATCACGTGTACA
CATAATTTCATAATCACCAGGCATGACGTGGCATGCCACATCATCAATGT
GTAACTGATTGATCCTGCTACTATCATCCTCTGCTCTGCTGACTACACTA
CAAGTGTGAGCTTCCTTAACAGTGTGGAATAGGAATCATGCACAGATCTT
GTTTTCTTCTTACTGTCGCGCCAAAGGCCTCTGTCATGTCCAAATCCTCA
TGCTTCATTCCATTTGGTAGTTTCCATTCGAAATGGTATAATAACATCGC
GAGTGTAAGCTCCACGCTGGCCAGACCAAATGACATTCCAGGGCATATCC
TCCTACCAGCACCAAATGGGATGTACTCAAAATTAGTCCCCTTGTAGTCA
ACAGAATGGTCAATGAATCTCTCGGGAATAAAGCTCTCAGGTTCAGTCCA
ATACATGGGATCTCTTCCAGTTGCCCATGAATTAACAATGACTCTGGCTT
TTGCAGGAAGGGGGGGCCCGGT
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