CX296888

Overview
NameCX296888
Unique NameCX296888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = -1
Query:  160 ITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWKL 519
            + ++ YL  V+ ET RL+P+A   L R    DV+I G  + KG+ V++  +A+ RD   W  P  F PERF   + D     +   PFGAG R C G+  A+  + + L  L+ +F +KL
Sbjct:  348 LVKMEYLDMVVNETLRLYPIAGR-LERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKKNKD-NINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKL 465          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP311_DROME (Probable cytochrome P450 311a1 OS=Drosophila melanogaster GN=Cyp311a1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = -1
Query:  160 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWKL 591
            E  ++ R EL Q +   +  +   +  LPYL+A++KE  RL+ + P    R+ +   EI G T   G  + +N + +  D+  + +P  F PER+L  D  V    F  IPF  G  +C G   ++ ++ ++   L+  F  +L
Sbjct:  314 ETQTRLRKEL-QDVALDETTDLDALNGLPYLEALIKEVLRLYTIVPT-TGRQTTQSTEIGGRTYCAGVTLWINMYGLAHDKEYYPDPYAFKPERWLPEDGAVAPPAFSYIPFSGGPHVCIGRRYSLLLMKLLTARLVREFQMEL 455          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP2E1_RABIT (Cytochrome P450 2E1 OS=Oryctolagus cuniculus GN=CYP2E1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  163 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWK 591
            E   K   E+++ IG  +     D  ++PY+ AV+ E  R   + P  LP +A+ D    G+ + KG+ V+    ++  D+  + +P  F PE FL  +   K  ++   PF AG+R+C G  LA   L ++L +++  F+ K
Sbjct:  320 EIEEKLHEEIDRVIGPSRMPSVRDRVQMPYMDAVVHEIQRFIDLVPSNLPHEATRDTTFQGYVIPKGTVVIPTLDSLLYDKQEFPDPEKFKPEHFLNEEGKFKYSDY-FKPFSAGKRVCVGEGLARMELFLLLSAILQHFNLK 461          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP2CU_RABIT (Cytochrome P450 2C30 OS=Oryctolagus cuniculus GN=CYP2C30 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 42/143 (29.37%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  163 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWK 591
            E  +K + E+E+ IGR +     D + +PY  AV+ E  R   + P  +P   + D++  G+ + KG+ +L +  ++  DE  + NP  F P  FL +  + K  ++  +PF  G+R C G  LA   L ++L +++  F  K
Sbjct:  317 EIAAKVQEEIERVIGRDRSPCMQDRSCMPYTDAVIHEIQRYIDMVPNNVPHAVTQDIQFRGYLIPKGTHILPSLTSVLYDEKEFPNPEKFDPGHFLDASGNFKKSDY-FLPFSIGKRACAGEGLARMELFLVLTTILQHFTLK 458          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZAU (Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = -1
Query:  112 ELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSD-LDV-KGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFD-WKLXXXXXXXXXKFGITLQ 567
            EL++ +G  +    SD   LP L+A + E FR     P  +P   + D  + G+ + K + V +N W I  D   W  P  F P+RFL +D  +V K    +++ FG G+R C G  +A   +++ L  LI     + L         ++G+T++
Sbjct:  351 ELKENVGLDRTPVLSDRNNLPLLEAFILEIFRHSSFLPFTIPHCTTKDTSLNGYYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVNKVDGEKVMVFGLGKRRCIGEVIARNEVYMFLAILIQKLHFYNLPGEPLDMTPEYGLTMK 505          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP2A6_HUMAN (Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  163 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWK 591
            E  +K   E+++ IG+ +  +  D  ++PY++AV+ E  R   V P+ L R+   D +   F + KG++V     ++ RD S + NP  F P+ FL      K ++   +PF  G+R C G  LA   L +   +++ +F  K
Sbjct:  322 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFK-KSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLK 463          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP27A_RABIT (Sterol 26-hydroxylase, mitochondrial OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 44/147 (29.93%), Postives = 69/147 (46.94%), Query Frame = -1
Query:  160 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRN---FELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWKL 591
            E  +  R E+   +  G+  +  D   +P L+AVLKET RL+PV P         ++E+ GF   K ++ +   +   RD ST+  P  F P R+L        +    F  +PFG G R C G  +A   + ++L  LI  ++  L
Sbjct:  359 EIQAALRKEVVGVVAAGQVPQHKDFAHMPLLKAVLKETLRLYPVIPANSRIIVDKEIEVGGFLFPKNTQFVFCHYVTSRDPSTFSEPDTFWPYRWLRKGQPETSKTQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQRYELML 505          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP27A_MOUSE (Sterol 26-hydroxylase, mitochondrial OS=Mus musculus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = -1
Query:  169 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFL-GSDLDVKG--RNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFD 591
            EAL K   E+   +  GK  +  D   +P L+AV+KET RL+PV P         + EI GF   K ++ ++  + + RD S +  P  F P R+L   + D  G    F  +PFG G R C G  +A   + +ML  L+  ++
Sbjct:  361 EALHK---EVTGVVPFGKVPQHKDFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFPKNTQFVLCHYVVSRDPSVFPEPNSFQPHRWLRKKEADNPGILHPFGSVPFGYGVRSCLGRRIAELEMQLMLSRLVQKYE 501          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = -1
Query:   70 ELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWKLXXXXXXXXXKFGITLQKAQPLRAVPMAI*P 567
            E++  +   +     D+  +PYL+A LKE+ RL P  P F  R       +  + + KG+ + +N   +G  E  +++   F PER+L  +  +    F  +PFG G+R+C G  LA   LH+ L  +I  +D              GI +    P R +P+A  P
Sbjct:  355 EVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVP-FTTRTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKINP--FAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDNEPVEMLHLGILV----PSRELPIAFRP 513          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 40/139 (28.78%), Postives = 76/139 (54.68%), Query Frame = -1
Query:  163 ELEQTIGRGKPLEE---SDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTW-DNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWK 567
            +L++ + R  P  E     +++L YL+ V+KE  RL+P+A L   RK      + G  ++ G+ + V+ W++  D   W D+   F PER+   D ++       +PFG G RIC G+ LA+  + ++L +++ ++ ++
Sbjct:  351 KLQEEVDRECPDPEVTFDQLSKLKYLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESGD-ELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFE 488          
The following BLAST results are available for this feature:
BLAST of CX296888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
CP3A6_RABIT2.478e-1235.83Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP311_DROME2.478e-1228.47Probable cytochrome P450 311a1 OS=Drosophila melan... [more]
CP2E1_RABIT2.478e-1229.37Cytochrome P450 2E1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2CU_RABIT2.478e-1229.37Cytochrome P450 2C30 OS=Oryctolagus cuniculus GN=C... [more]
CP1A1_LIZAU2.478e-1229.03Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 ... [more]
CP2A6_HUMAN3.237e-1229.37Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1... [more]
CP27A_RABIT3.237e-1229.93Sterol 26-hydroxylase, mitochondrial OS=Oryctolagu... [more]
CP27A_MOUSE3.237e-1232.64Sterol 26-hydroxylase, mitochondrial OS=Mus muscul... [more]
CP24A_RAT3.237e-1228.311,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
C13A7_CAEEL3.237e-1228.78Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC05803H09SK FerrChloL1 Citrus clementina cDNA clone C05803H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296888 ID=CX296888; Name=CX296888; organism=Citrus clementina; type=EST; length=591bp
AAATTAATTAACCAATGATAAAGTGCTTTATTGGCTATAAACTATATATA
CATATACATATATGATGTGGGGCTAAATGGCCATAGGGACAGCACGAAGG
GGTTGAGCCTTCTGTAAGGTTATACCAAATTTCTCTTCCATGTCCATCTT
CTCATCTTCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCTAACATTA
TATGTAACATTCTGATTGCCAATGGCAAACCAGGACAAATGCGTCGCCCA
GCTCCAAAGGGGATTAGCTCAAAATTGCGGCCTTTGACATCAAGATCTGA
TCCCAAGAACCTTTCGGGCATGAAAATGAGAGGGTTGTCCCATGTGCTTT
CATCTCTGCCAATAGCCCACGCATTGACTAAAACTTTTGAACCTTTTTGC
ACTGTGAAGCCAGCGATCTCTACGTCTGTTGAGGCTTTACGGGGGAGAAA
TAAGGGAGCTACTGGGTGCAACCTGAAGGTTTCTTTGAGTACTGCTTGTA
GATAAGGTAATCGAGTGATGTCTGATTCCTCAAGTGGTTTGCCCCTGCCA
ATTGTTTGTTCCAGCTCCAATCTTGCTTTTGATAAAGCCTC
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