CX296888

Overview
NameCX296888
Unique NameCX296888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: THAS_PIG (Thromboxane-A synthase OS=Sus scrofa GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  172 LPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSF 510
            LPYL  VL ET R++P A  F  R+A+ D E+ G  +  G+ + V   A+  D   W +P  F PERF      ++ + F  +PFGAG R C G+ L +  + + L  ++  F
Sbjct:  391 LPYLDMVLSETLRMYPPAFRFT-REAARDCEVLGQRIPAGTVLEVAVGALHHDPKHWPHPETFDPERFTAEAQRLQ-QPFTYLPFGAGPRSCLGVQLGLLEIKLTLLHILRKF 501          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP6A2_DROME (Cytochrome P450 6a2 OS=Drosophila melanogaster GN=Cyp6a2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = -1
Query:  172 LEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAG---FTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSF 534
            L    I  + YL  V+ ET RL+ + P  L RKA  D  + G     ++KG++V++ A A  RDE  + NP  F PERF    +  +  + E +PFG G R C G+        I L  +I+ F
Sbjct:  351 LTYESIKAMTYLNQVISETLRLYTLVP-HLERKALNDYVVPGHEKLVIEKGTQVIIPACAYHRDEDLYPNPETFDPERFSPEKVAAR-ESVEWLPFGDGPRNCIGMRFGQMQARIGLAQIISRF 472          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = -1
Query:  169 EALSKARLELEQTIGRGK--PLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFD 591
            EA  K   E+   +G  K  P+    + +L Y+   +KET R++P  PL L RK   D EI G  +  G+ + ++   +GR E  +  P  F PERF       K   +  IPF AG R C G   A+  +  ++ +++  ++
Sbjct:  337 EAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPL-LGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYE 478          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = -1
Query:  169 EALSKARLELEQTIGRGK--PLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFD 591
            EA  K   E+   +G  K  P+    + +L Y+   +KET R++P  PL L RK   D EI G  +  G+ + ++   +GR E  +  P  F PERF       K   +  IPF AG R C G   A+  +  ++ +++  ++
Sbjct:  337 EAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPL-LGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYE 478          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = -1
Query:  172 KARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGR--NFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSF 579
            K + E+++T+    P+    +  + YL  V+ E+ RL+P+A + L R +  DVEI G  + KG+ V++  + + R+   W  P  F PERF     + KG    +  +PFG G R C G+  A+  + + +  ++ +F
Sbjct:  330 KLQDEIDRTLPNKAPVTYDALMDMEYLDMVVNESLRLYPIA-IRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQEFCPERF---SKENKGNIDPYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNF 463          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 42/141 (29.79%), Postives = 68/141 (48.23%), Query Frame = -1
Query:  163 KARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGR--NFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSFDWK 579
            K + E++  +    P     +  + YL  VL ET RL+P+    L R    D+E+ G  + KGS V +  +A+  D   W  P  F PERF     + KG    +  +PFG G R C G+  A+  + + L  ++ +F ++
Sbjct:  331 KLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNR-LERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHWPKPEEFHPERF---SKENKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP2C2_RABIT (Cytochrome P450 2C2 OS=Oryctolagus cuniculus GN=CYP2C2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 38/140 (27.14%), Postives = 73/140 (52.14%), Query Frame = -1
Query:  172 EALSKARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSF 591
            E ++K + E+E+ IGR +     D +R+PY  A + E  R   + P  +P     +++   + + KG+ VL +  ++  D+  + NP  F P  FL +  + +  ++  +PF  G+R+C G  LA   L + L +++ +F
Sbjct:  318 EVIAKVQEEIERVIGRHRSPCMQDRSRMPYTDATVHEIQRYINLIPNNVPHTTICNLKFRNYLIPKGTDVLTSLSSVLHDDKEFPNPDRFDPGHFLDASGNFRKSDY-FMPFSTGKRVCVGEALARMELFLFLTAILQNF 456          
BLAST of CX296888 vs. ExPASy Swiss-Prot
Match: CP2BC_RAT (Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 39/136 (28.68%), Postives = 69/136 (50.74%), Query Frame = -1
Query:  172 KARLELEQTIGRGKPLEESDITRLPYLQAVLKETFRLHPVAPLFLPRKASTDVEIAGFTVQKGSKVLVNAWAIGRDESTWDNPLIFMPERFLGSDLDVKGRNFELIPFGAGRRICPGLPLAIRMLHIMLGSLINSF 579
            K + E++Q IG  +     D T++PY  AV+ E  R   + P+ LP + + D    G+ + K ++V     +   D   ++ P  F PE FL ++  +K ++   +PF  G+RIC G  +A   L I   +++ +F
Sbjct:  324 KVQKEIDQVIGSHRLPTPDDRTKMPYTDAVIHEIQRFADLTPIGLPHRVTKDTVFRGYLLPKNTEVYPILSSALHDPRYFEQPDTFNPEHFLDANGALK-KSEAFLPFSTGKRICLGEGIARNELFIFFTAILQNF 458          
The following BLAST results are available for this feature:
BLAST of CX296888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
THAS_PIG7.972e-1135.40Thromboxane-A synthase OS=Sus scrofa GN=TBXAS1 PE=... [more]
CP6A2_DROME7.972e-1134.68Cytochrome P450 6a2 OS=Drosophila melanogaster GN=... [more]
CP4D1_DROSI7.972e-1130.07Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME7.972e-1130.07Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP3AP_MOUSE7.972e-1129.71Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
CP3A2_RAT7.972e-1129.79Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP2C2_RABIT7.972e-1127.14Cytochrome P450 2C2 OS=Oryctolagus cuniculus GN=CY... [more]
CP2BC_RAT7.972e-1128.68Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b... [more]

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Properties
Property NameValue
Genbank descriptionC05803H09SK FerrChloL1 Citrus clementina cDNA clone C05803H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296888 ID=CX296888; Name=CX296888; organism=Citrus clementina; type=EST; length=591bp
AAATTAATTAACCAATGATAAAGTGCTTTATTGGCTATAAACTATATATA
CATATACATATATGATGTGGGGCTAAATGGCCATAGGGACAGCACGAAGG
GGTTGAGCCTTCTGTAAGGTTATACCAAATTTCTCTTCCATGTCCATCTT
CTCATCTTCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCTAACATTA
TATGTAACATTCTGATTGCCAATGGCAAACCAGGACAAATGCGTCGCCCA
GCTCCAAAGGGGATTAGCTCAAAATTGCGGCCTTTGACATCAAGATCTGA
TCCCAAGAACCTTTCGGGCATGAAAATGAGAGGGTTGTCCCATGTGCTTT
CATCTCTGCCAATAGCCCACGCATTGACTAAAACTTTTGAACCTTTTTGC
ACTGTGAAGCCAGCGATCTCTACGTCTGTTGAGGCTTTACGGGGGAGAAA
TAAGGGAGCTACTGGGTGCAACCTGAAGGTTTCTTTGAGTACTGCTTGTA
GATAAGGTAATCGAGTGATGTCTGATTCCTCAAGTGGTTTGCCCCTGCCA
ATTGTTTGTTCCAGCTCCAATCTTGCTTTTGATAAAGCCTC
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