CX297485

Overview
NameCX297485
Unique NameCX297485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:415..1206. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.025e-39
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 339
            RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:  103 RDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D                  LPD+DDD
Sbjct:  105 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            +D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:  113 KDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            +D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:  113 KDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.529e-38
Identity = 78/110 (70.91%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D               +  LPDDD+D
Sbjct:  105 RDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
The following BLAST results are available for this feature:
BLAST of CX297485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GSP1_CANAL4.025e-3971.56GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_DANRE1.171e-3869.09GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN3_ORYSJ1.171e-3870.00GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.171e-3870.00GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN_BRUMA1.529e-3870.91GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RAN_XENLA4.450e-3869.09GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT4.450e-3869.09GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB4.450e-3869.09GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE4.450e-3869.09GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA4.450e-3869.09GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionC06002A03SK RindPdig24 Citrus clementina cDNA clone C06002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297485 ID=CX297485; Name=CX297485; organism=Citrus clementina; type=EST; length=790bp
GAATTCGGCACGAGGGATCTTTGCCGGGTGTGTGAAAATATACCGATTGT
TCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGC
AGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCC
AAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCT
TGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTC
CAGAAGTACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTT
GCCGCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGA
GTAGAGAGGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTG
CTTGACTTAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGA
TTTGGTTATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGT
TAGGTTGTACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTGTTT
TTTTGGAGTTTTCTTATTACTGGAATGATATGTTTCAGTGACGTGGATTA
TGCCATTCCAATACTTTTATGCATAAGTTTTGTATGTTCCAACCGGTGGC
GCATCAGTTGAATCATGAGTCCTGAGTTGTAGCGTTATGCCAAATATATT
TGTTTCAATTGACTTGAGTGGCAGTGAGCCAGTGATGGCTGGTTCTAATC
ACGCACATTGTTGCCATGGCATTGAGTATATGGAGTTTGA
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