CX297485

Overview
NameCX297485
Unique NameCX297485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.590e-38
Identity = 75/110 (68.18%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D                  LPD+DDD
Sbjct:  105 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.913e-38
Identity = 75/110 (68.18%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D                  LPD+DDD
Sbjct:  105 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.295e-37
Identity = 75/110 (68.18%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDD 215
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.884e-37
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D               +  LPDDD+D
Sbjct:  105 RDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.884e-37
Identity = 76/112 (67.86%), Postives = 85/112 (75.89%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAF 348
            RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E  ID               + PLPD+DD  F
Sbjct:  103 RDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAIDPEVMQAMQKDLEEANAMPLPDEDDADF 214
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.920e-37
Identity = 73/110 (66.36%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPD+D++
Sbjct:  106 RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215
The following BLAST results are available for this feature:
BLAST of CX297485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN_HUMAN4.450e-3869.09GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK4.450e-3869.09GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA4.450e-3869.09GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN4.450e-3869.09GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_SALSA7.590e-3868.18GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU9.913e-3868.18GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAN_XENTR1.295e-3768.18GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_ONCVO2.884e-3769.09GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
GSP1_YARLI2.884e-3767.86GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RAN_DROME4.920e-3766.36GTP-binding nuclear protein Ran OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC06002A03SK RindPdig24 Citrus clementina cDNA clone C06002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297485 ID=CX297485; Name=CX297485; organism=Citrus clementina; type=EST; length=790bp
GAATTCGGCACGAGGGATCTTTGCCGGGTGTGTGAAAATATACCGATTGT
TCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGC
AGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCC
AAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCT
TGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTC
CAGAAGTACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTT
GCCGCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGA
GTAGAGAGGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTG
CTTGACTTAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGA
TTTGGTTATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGT
TAGGTTGTACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTGTTT
TTTTGGAGTTTTCTTATTACTGGAATGATATGTTTCAGTGACGTGGATTA
TGCCATTCCAATACTTTTATGCATAAGTTTTGTATGTTCCAACCGGTGGC
GCATCAGTTGAATCATGAGTCCTGAGTTGTAGCGTTATGCCAAATATATT
TGTTTCAATTGACTTGAGTGGCAGTGAGCCAGTGATGGCTGGTTCTAATC
ACGCACATTGTTGCCATGGCATTGAGTATATGGAGTTTGA
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