CX297485

Overview
NameCX297485
Unique NameCX297485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.104e-36
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            +DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  106 KDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.212e-35
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            +DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  106 KDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.700e-35
Identity = 72/110 (65.45%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D                 PLP+++DD
Sbjct:  103 RDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDDDDDAF 348
            +DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPD++DD F
Sbjct:  107 KDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDDDDDAF 348
            +DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPDD+DD F
Sbjct:  107 KDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   16 DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342
            DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D               + PLP+D+DD
Sbjct:  103 DLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 324
            RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:  109 RDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 267
            RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:  105 RDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 327
            RDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:  106 RDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   13 RDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDD 336
            RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPDDD
Sbjct:  108 RDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
The following BLAST results are available for this feature:
BLAST of CX297485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RANT_RAT7.104e-3665.45GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE1.212e-3565.45GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_NEUCR2.700e-3565.45GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_TETPY1.099e-2853.45GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_TETTH4.175e-2853.39GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_DICDI4.175e-2854.13GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN4_ARATH9.300e-2861.54GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN_PLAFA2.072e-2769.41GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RANL_DROME3.657e-2452.38GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA1.031e-1839.50GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionC06002A03SK RindPdig24 Citrus clementina cDNA clone C06002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297485 ID=CX297485; Name=CX297485; organism=Citrus clementina; type=EST; length=790bp
GAATTCGGCACGAGGGATCTTTGCCGGGTGTGTGAAAATATACCGATTGT
TCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGC
AGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCC
AAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCT
TGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTC
CAGAAGTACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTT
GCCGCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGA
GTAGAGAGGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTG
CTTGACTTAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGA
TTTGGTTATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGT
TAGGTTGTACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTGTTT
TTTTGGAGTTTTCTTATTACTGGAATGATATGTTTCAGTGACGTGGATTA
TGCCATTCCAATACTTTTATGCATAAGTTTTGTATGTTCCAACCGGTGGC
GCATCAGTTGAATCATGAGTCCTGAGTTGTAGCGTTATGCCAAATATATT
TGTTTCAATTGACTTGAGTGGCAGTGAGCCAGTGATGGCTGGTTCTAATC
ACGCACATTGTTGCCATGGCATTGAGTATATGGAGTTTGA
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