CX297485
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.104e-36 Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342 +DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV PALAPPEV +D + LPD++DD Sbjct: 106 KDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.212e-35 Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342 +DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV PALAPPEV +D + LPD++DD Sbjct: 106 KDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.700e-35 Identity = 72/110 (65.45%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342 RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+ L FV +PALAPP +D PLP+++DD Sbjct: 103 RDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28 Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDDDDDAF 348 +DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE ALAP ++ + D +Q LPD++DD F Sbjct: 107 KDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28 Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDDDDDAF 348 +DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE AL P+ + D +Q LPDD+DD F Sbjct: 107 KDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28 Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 16 DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 342 DL RVCENIPIVLCGNKVDVK+R+VK Q+ FHR+ NL YY++SAKSNYNFEKPF++L KL G+ + V+ P L PE +D + PLP+D+DD Sbjct: 103 DLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28 Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 324 RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD L FVES PE QID +QPL Sbjct: 109 RDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27 Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 267 RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+ PNL FV A A PE QID Sbjct: 105 RDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24 Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 13 RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 327 RDL RVC NIPIV+CGNKVD+ +++ K V F RK N+ E+SAKSNYN EKPF+YL RKL GDP+L V+SPA+ PP+V S+PLP Sbjct: 106 RDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18 Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 13 RDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDD 336 RD+ R+C + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L DP + F ++PAL P ++ +D + PLPDDD Sbjct: 108 RDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226 The following BLAST results are available for this feature:
BLAST of CX297485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297485 ID=CX297485; Name=CX297485; organism=Citrus clementina; type=EST; length=790bpback to top |