CX297485

Overview
NameCX297485
Unique NameCX297485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:415..1206. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297485 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   43 PIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 267
            PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D
Sbjct:  115 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 191
The following BLAST results are available for this feature:
BLAST of CX297485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GSP1_ENCCU3.793e-1349.35GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionC06002A03SK RindPdig24 Citrus clementina cDNA clone C06002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297485 ID=CX297485; Name=CX297485; organism=Citrus clementina; type=EST; length=790bp
GAATTCGGCACGAGGGATCTTTGCCGGGTGTGTGAAAATATACCGATTGT
TCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGC
AGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCC
AAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCT
TGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTC
CAGAAGTACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTT
GCCGCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGA
GTAGAGAGGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTG
CTTGACTTAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGA
TTTGGTTATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGT
TAGGTTGTACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTGTTT
TTTTGGAGTTTTCTTATTACTGGAATGATATGTTTCAGTGACGTGGATTA
TGCCATTCCAATACTTTTATGCATAAGTTTTGTATGTTCCAACCGGTGGC
GCATCAGTTGAATCATGAGTCCTGAGTTGTAGCGTTATGCCAAATATATT
TGTTTCAATTGACTTGAGTGGCAGTGAGCCAGTGATGGCTGGTTCTAATC
ACGCACATTGTTGCCATGGCATTGAGTATATGGAGTTTGA
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