CX297491

Overview
NameCX297491
Unique NameCX297491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_PORGI (Elongation factor G OS=Porphyromonas gingivalis GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 52/165 (31.52%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  220 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            G    VD  KG     E   S+  GFQ A K G LA   +  +   V D   H     +   ++   A +    +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E FG+   LR  TSG+A  T  F H+  + S
Sbjct:  528 GELQFVDEVKGGNIPKEFIPSIQKGFQRAMKNGVLAGYPLDQLKVTVIDGSFHPVDSDQLSFEIC--ALQAFKNACEKAHPTLMEPIMKLEVVTPEESMGDVIGDLNKRRGQV-EGMESSRTGARIVKAKVPLAEMFGYVTALRTITSGRATSTMTFSHYSEVPS 689          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_PORG3 (Elongation factor G OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 52/165 (31.52%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  220 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            G    VD  KG     E   S+  GFQ A K G LA   +  +   V D   H     +   ++   A +    +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E FG+   LR  TSG+A  T  F H+  + S
Sbjct:  528 GELQFVDEVKGGNIPKEFIPSIQKGFQRAMKNGVLAGYPLDQLKVTVIDGSFHPVDSDQLSFEIC--ALQAFKNACEKAHPTLMEPIMKLEVVTPEESMGDVIGDLNKRRGQV-EGMESSRTGARIVKAKVPLAEMFGYVTALRTITSGRATSTMTFSHYSEVPS 689          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_PARD8 (Elongation factor G OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=fusA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  220 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA---SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            G    +D  KG     E   SV  GF+ A K G LA     G   +   V L   + H      +      I A   +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E+FG+   LR  TSG+A  +  F H+  +SS
Sbjct:  529 GTLQFIDEVKGGNIPKEFIPSVQKGFEKAMKNGVLA-----GYPLDKLKVTLIDGSFHPVDSDQLSFEIAAIQAFKNASAKAGPVLMEPIMQMEVVTPEESMGDVIGDLNKRRGQV-EGMETSRTGARIVKAKVPLAETFGYVTALRTITSGRATSSMQFSHYAQVSS 690          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_STRAW (Elongation factor G OS=Streptomyces avermitilis GN=fusA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 56/169 (33.14%), Postives = 79/169 (46.75%), Query Frame = 1
Query:  211 ETTGPNM-VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHAD-----AIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            ET GP    V+   G +   E   SV AG Q A + G LA   M G+   + D   H       A    G Q    A R        A P LLEP+  VE+  PE+++G +   LN +RG +    +R G  +  +K  +P+ E FG+ G LR+ TSG+A  +  FD +
Sbjct:  532 ETDGPAYEFVNKVTGGRIPREYIPSVDAGAQEAMQFGILAGYEMTGVRVTLLDGAYHEVDSSELAFKIAGSQAFKEAAR-------KASPVLLEPMMAVEVTTPEESMGDVIGDLNSRRGQIQAMEERSGARV--VKGLVPLSEMFGYVGDLRSKTSGRASYSMQFDSY 691          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_BACV8 (Elongation factor G OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=fusA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  214 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ---LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            T G    +D  KG     E   SV  GFQ A K G LA     G   +   VVL   + H      +      I A +     A P L EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+   LR  TSG+A  +  +DH   +SS
Sbjct:  525 TQGGLQFIDEVKGGNVPKEFIPSVQKGFQTAMKNGVLA-----GYPLDSLKVVLKDGSFHPVDSDQLSFEICAIQAYKNACAKAGPVLTEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAKVPLAEMFGYVTALRTITSGRATSSMTYDHHAQVSS 688          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICBR (Elongation factor G OS=Rickettsia bellii (strain RML369-C) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLAK----KIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMM 708
            AR KI+ E     KDL +    K + F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G +   LN +RG V  +   P      IKAY+P+ E FG+  TLR+ + G+A  + VF+H+D +
Sbjct:  506 ARVKIIFEPLKDVKDLKEEDKNKSFIFESKIVGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLIDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMKVEVITPDEYMGDVIGDLNSRRGQV--QGMEPRGNAQVIKAYVPLAEMFGYVNTLRSLSQGRAQYSMVFNHYDQV 686          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICBE (Elongation factor G OS=Rickettsia bellii GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLAK----KIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMM 708
            AR KI+ E     KDL +    K + F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G +   LN +RG V  +   P      IKAY+P+ E FG+  TLR+ + G+A  + VF+H+D +
Sbjct:  505 ARVKIIFEPLKDVKDLKEEDKNKSFIFESKIVGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLIDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMKVEVITPDEYMGDVIGDLNSRRGQV--QGMEPRGNAQVIKAYVPLAEMFGYVNTLRSLSQGRAQYSMVFNHYDQV 685          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICB8 (Elongation factor G OS=Rickettsia bellii (strain OSU 85-389) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLAK----KIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMM 708
            AR KI+ E     KDL +    K + F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G +   LN +RG V  +   P      IKAY+P+ E FG+  TLR+ + G+A  + VF+H+D +
Sbjct:  505 ARVKIIFEPLKDVKDLKEEDKNKSFIFESKIVGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLIDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMKVEVITPDEYMGDVIGDLNSRRGQV--QGMEPRGNAQVIKAYVPLAEMFGYVNTLRSLSQGRAQYSMVFNHYDQV 685          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_SULDN (Elongation factor G OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 48/162 (29.63%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  238 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGIC----FEVCDVVLHADAIHRGGGQVIP---TARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWD 702
            D   G  + NEIK  V+      + E   AE    G+      E  D+ L+  + H      +     A          A+P +LEP+  VE++ PE  +G +   LN++RG V     R G  +  + A++P+ E FG+S  LR+AT G+A  +  FDH++
Sbjct:  521 DAGTGFVFHNEIKGGVIPKEYIPAVEKGCAETMSNGVLAGYPMEDIDITLYDGSYHEVDSNEMAFKLAASMGFKEGCRKARPAILEPLMKVEVEVPEDYMGDVIGDLNRRRGQVTNMGDRSGNKI--VDAFVPLAEMFGYSTDLRSATQGRATYSMEFDHYE 680          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_BACFR (Elongation factor G OS=Bacteroides fragilis GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  214 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            T G    VD  KG     E   SV  GFQ A K G LA   +  +   + D   H     +   ++   A +    +   A P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+   LR  TSG+A  + V+ H   +SS
Sbjct:  525 TQGGLQFVDEVKGGNIPKEFIPSVQKGFQTAMKNGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEIC--AIQAYKNACAKAGPVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSS 688          
The following BLAST results are available for this feature:
BLAST of CX297491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
EFG_PORGI1.622e-1231.52Elongation factor G OS=Porphyromonas gingivalis GN... [more]
EFG_PORG31.622e-1231.52Elongation factor G OS=Porphyromonas gingivalis (s... [more]
EFG_PARD82.119e-1231.55Elongation factor G OS=Parabacteroides distasonis ... [more]
EFG_STRAW3.614e-1233.14Elongation factor G OS=Streptomyces avermitilis GN... [more]
EFG_BACV84.720e-1232.35Elongation factor G OS=Bacteroides vulgatus (strai... [more]
EFG_RICBR8.051e-1228.93Elongation factor G OS=Rickettsia bellii (strain R... [more]
EFG_RICBE8.051e-1228.93Elongation factor G OS=Rickettsia bellii GN=fusA P... [more]
EFG_RICB88.051e-1228.93Elongation factor G OS=Rickettsia bellii (strain O... [more]
EFG_SULDN1.052e-1129.63Elongation factor G OS=Sulfurimonas denitrificans ... [more]
EFG_BACFR1.052e-1131.14Elongation factor G OS=Bacteroides fragilis GN=fus... [more]

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Properties
Property NameValue
Genbank descriptionC06002A10SK RindPdig24 Citrus clementina cDNA clone C06002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297491 ID=CX297491; Name=CX297491; organism=Citrus clementina; type=EST; length=725bp
CGAATTCGGCACGAGGCTGTGATGAGTAAGTCTCCCAACAAGCATAATCG
TCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAG
ATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATC
TTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTG
TTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGG
GAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAG
TGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTG
CTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTG
GTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTC
ACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGC
TCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGTG
GTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATC
AAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGAG
GGCTGCAACGTCAGGACAGGCCTTCCCCACATGTGTGTTTGATCACTGGG
ACATGATGTCATCCGATCCACTGGA
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