CX297491

Overview
NameCX297491
Unique NameCX297491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig594 contig Ccv1_Contig594:233..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query:  250 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+   +  FDH+  + S+
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSN 681          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query:  250 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+   +  FDH+  + S+
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSN 681          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query:  250 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+   +  FDH+  + S+
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSN 681          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICPU (Elongation factor G OS=Rickettsia peacockii (strain Rustic) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 55/199 (27.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLA----KKIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            AR KI+ E     KDL      KI+ F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G I   LN +RG +  +   P      + A +P+ E FG+  TLR+ + G+A  + +F H+D + S
Sbjct:  507 ARVKIIFEPLKEVKDLKDEDKNKIFVFESKIIGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQI--QSMDPRGNAQVVTANIPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPS 689          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICAE (Elongation factor G OS=Rickettsia africae (strain ESF-5) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 55/199 (27.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLA----KKIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            AR KI+ E     KDL      KI+ F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G I   LN +RG +  +   P      + A +P+ E FG+  TLR+ + G+A  + +F H+D + S
Sbjct:  507 ARVKIIFEPLKEVKDLKDEDKNKIFVFESKIVGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQI--QSMDPRGNAQVVTANVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPS 689          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG1_BURTA (Elongation factor G 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 52/167 (31.14%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  247 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE+ +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S +LR+AT G+A  T  F H+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEEFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHY 684          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_THEFY (Elongation factor G OS=Thermobifida fusca (strain YX) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  235 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            V+   G +   E   SV AG Q A++ G LA   + GI   + D   H         ++  +      AS+  A P LLEPV  VE+  PE+ +G +   LN +RG +    +R GT +  +KA +P+ E FG+ G LR+ T G+A  T VF  +  + S+
Sbjct:  536 VNNITGGRIPREYIPSVDAGCQEAAQFGVLAGYPLVGIKVTLQDGAYHDVDSSELAFKIAGSMAFKEAASK--ANPVLLEPVMAVEVTTPEEYMGDVIGDLNSRRGQIQSMEERAGTRV--VKALVPLSEMFGYVGDLRSRTQGRANYTMVFHSYAEVPSN 692          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICRH (Elongation factor G OS=Rickettsia rhipicephali GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 55/197 (27.92%), Postives = 90/197 (45.69%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLAK--KIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            AR KI+ E     KDL    KI+ F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G I   LN +RG +  +   P      + A +P+ E FG+  TLR+ + G+A  + +F H+D + S
Sbjct:  507 ARVKIIFEPLKDVKDLKDEDKIFVFESKIIGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQI--QSMDPRGNAQVVTANVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPS 687          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICM5 (Elongation factor G OS=Rickettsia massiliae (strain Mtu5) GN=fusA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 55/197 (27.92%), Postives = 90/197 (45.69%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLAK--KIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            AR KI+ E     KDL    KI+ F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G I   LN +RG +  +   P      + A +P+ E FG+  TLR+ + G+A  + +F H+D + S
Sbjct:  507 ARVKIIFEPLKDVKDLKDEDKIFVFESKIIGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQI--QSMDPRGNAQVVTANVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPS 687          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EFG_RICCN (Elongation factor G OS=Rickettsia conorii GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 55/199 (27.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:  136 ARSKILSEEFGWDKDLA----KKIWCFGPETTGPNMVVDMCKGVQY-LNEIKDS-VVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSS 714
            AR KI+ E     KDL      KI+ F  +  G  +  +   GV+  LN I+++ V+AG+     +  L +     +   V    + A A  R G                   P+LLEP+  VE+  P++ +G I   LN +RG +  +   P      + A +P+ E FG+  TLR+ + G+A  + +F H+D + S
Sbjct:  507 ARVKIIFEPLKEVKDLKDEDKNKIFVFESKIIGGAVPKEYIPGVEKGLNNIRETGVIAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREG--------------MPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQI--QSMDPRGNAQVVTANVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPS 689          
The following BLAST results are available for this feature:
BLAST of CX297491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
EFG_HELPG5.219e-1130.23Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELP25.219e-1130.23Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH5.219e-1130.23Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG_RICPU6.816e-1127.64Elongation factor G OS=Rickettsia peacockii (strai... [more]
EFG_RICAE6.816e-1127.64Elongation factor G OS=Rickettsia africae (strain ... [more]
EFG1_BURTA6.816e-1131.14Elongation factor G 1 OS=Burkholderia thailandensi... [more]
EFG_THEFY8.902e-1132.92Elongation factor G OS=Thermobifida fusca (strain ... [more]
EFG_RICRH8.902e-1127.92Elongation factor G OS=Rickettsia rhipicephali GN=... [more]
EFG_RICM58.902e-1127.92Elongation factor G OS=Rickettsia massiliae (strai... [more]
EFG_RICCN8.902e-1127.64Elongation factor G OS=Rickettsia conorii GN=fusA ... [more]

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Properties
Property NameValue
Genbank descriptionC06002A10SK RindPdig24 Citrus clementina cDNA clone C06002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297491 ID=CX297491; Name=CX297491; organism=Citrus clementina; type=EST; length=725bp
CGAATTCGGCACGAGGCTGTGATGAGTAAGTCTCCCAACAAGCATAATCG
TCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAG
ATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATC
TTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTG
TTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGG
GAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAG
TGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTG
CTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTG
GTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTC
ACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGC
TCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGTG
GTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATC
AAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGAG
GGCTGCAACGTCAGGACAGGCCTTCCCCACATGTGTGTTTGATCACTGGG
ACATGATGTCATCCGATCCACTGGA
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