CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.659e-28
Identity = 73/212 (34.43%), Postives = 115/212 (54.25%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSV------ENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSH----VSTRIMGTYGYAAPEYIMTGHLTPR 701
            F++ EL   T NF  +  +       VY+G +++     ++   V  K+       +    + +E+ FL  L H +LV+L+GYC E E ++L+Y++M  G++      +NN+     L   W +R+KIA  AA+G+ +LH  A  P+I+RD K+SNILLD+++ A +SDFGL+  GP   K H      T+  GT GY  PEY     LT +
Sbjct:  484 FSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMK---KFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNVEKHSSLINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWVARVSDFGLSLMGPVLGKDHNPYQRPTKAAGTVGYIDPEYYSLNVLTDK 692          

HSP 2 Score: 24.2534 bits (51), Expect = 7.659e-28
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVY  GVVLLE+
Sbjct:  692 KSDVYGLGVVLLEL 705          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 73/159 (45.91%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  231 VAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF-SKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            VAVK+   D S   +R+++ EV  L  + H NLV LIGYC E + R+L+YE+M  GS+ ++L  S    PL W  R++IA  AAKGL +LH    P +I+RD K+SNILLD +  A +SDFGL++   E D +HVS+   GT GY  PEY  +  LT +
Sbjct:  631 VAVKI-TADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQ-TEEDLTHVSSVAKGTVGYLDPEYYASQQLTEK 787          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 76/215 (35.35%), Postives = 117/215 (54.42%), Query Frame = 3
Query:   63 LRRDSAANPLIAF-TYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIY-RDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            L  ++A N  +AF  Y E+   T  F + + L       VY+G +  D     + V +    H    S     + + E+  L  +SHPNLV+L+G C E    VL+YE+M  G++  +L       LPW++R+ +A   AK +A+LH +  P IY RD K++NILLD D+N+ ++DFGL++ G   + SH+ST   GT GY  P+Y    HL+ +
Sbjct:  323 LLSEAAGNSSVAFFPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQND-----EWVAIKRLRHRDSESLD---QVMNEIKLLSSVSHPNLVRLLGCCIEQGDPVLVYEYMPNGTLSEHLQRDRGSGLPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGLSRLGMT-ESSHISTAPQGTPGYLDPQYHQCFHLSDK 528          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.301e-27
Identity = 70/199 (35.18%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  105 YDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL-PLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            +  + + T NF +   L       VYKG +       +    VAVK      S QG +E+  EV+ +  L H NLVKL+GYC E E ++L+YEF+   S++  LF       L W+ R  I  G  +G+ +LH+  +  +I+RD K SNILLD D    ++DFG+A+          + RI GT+GY  PEY++ G  +
Sbjct:  357 FKTIEVATENFAKTNKLGQGGFGEVYKGTL-------VNGTEVAVK-RLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSLDYFLFDPTKQGQLDWTKRYNIIGGITRGILYLHQDSRLTIIHRDLKASNILLDADMIPKIADFGMARISGIDQSVANTKRIAGTFGYMPPEYVIHGQFS 547          

HSP 2 Score: 28.4906 bits (62), Expect = 1.301e-27
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGV++LEI
Sbjct:  544 GQFSMKSDVYSFGVLILEI 562          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.302e-27
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL---LPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  EL+  T NF  +RVL       VYKG ++E     ++   V      G+   +   E++ EV+ L  ++H N+VKL+G C   E  VL+YE++  G +   L  K       + W +R++IA   A  L+++H A   P+ +RD KT+NILLD  Y A +SDFG ++      ++H++T + GT+GY  PEY ++   T +
Sbjct:  420 FSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVV-----GEGKME---EFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIAGALSYMHSAASIPIYHRDIKTTNILLDEKYRAKVSDFGTSRSITIA-QTHLTTLVAGTFGYMDPEYFLSSQYTDK 615          

HSP 2 Score: 26.9498 bits (58), Expect = 1.302e-27
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL+E+
Sbjct:  615 KSDVYSFGVVLVEL 628          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 77/232 (33.19%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    6 RHEEKEYGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL-PLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            +  +K YG  P+  E+      D      +   Y  ++  T +F ++  +       VYKG  S           VAVK      S QG  E+  EV+ + +L H NLV+++G+  E E R+L+YE++   S++N LF       L W+ R  I  G A+G+ +LH+  +  +I+RD K SNILLD D N  ++DFG+A+          ++RI+GTYGY +PEY M G  +
Sbjct:  299 KRAKKTYGTTPALDED------DKTTIESLQLDYRAIQAATNDFSENNKIGRGGFGDVYKGTFSNGTE-------VAVK-RLSKTSEQGDTEFKNEVVVVANLRHKNLVRILGFSIEREERILVYEYVENKSLDNFLFDPAKKGQLYWTQRYHIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIADFGMARIFGMDQTQQNTSRIVGTYGYMSPEYAMRGQFS 516          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.202e-27
Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF-SKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  EL   T NF  +RVL       VYKG     L +G        KV D D       E++ EV  L  ++H N+VKL+G C E E  +L+YE +  G +   L        + W +R++I+   A  LA+LH A   PV +RD KT+NILLD  Y A +SDFG ++     D++H++T + GT+GY  PEY  T   T +
Sbjct:  409 FSSKELEKATDNFNMNRVLGQGGQGTVYKGM----LVDGRIVAVKRSKVLDEDKV----EEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTWDVRLRISVEIAGALAYLHSAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSR-SINVDQTHLTTLVAGTFGYLDPEYFQTSQFTDK 602          

HSP 2 Score: 26.9498 bits (58), Expect = 2.202e-27
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL+E+
Sbjct:  602 KSDVYSFGVVLVEL 615          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 68/202 (33.66%), Postives = 114/202 (56.44%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            +T   L++ T +F Q+ ++       VY+             +    K+ +   S Q    +L  V  +  L HPN+V L GYC E   R+L+YE++  G++++ L +     + L W+ R+K+A G AK L +LHE   P +++R+FK++NILLD + N  LSD GLA   P  ++  VST+++G++GY+APE+ ++G  T
Sbjct:  383 YTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNG------KIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTER-QVSTQVVGSFGYSAPEFALSGIYT 577          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 74/199 (37.19%), Postives = 112/199 (56.28%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTG 686
            F+  EL++ + NF    +L       VYKG +++          VAVK    + +  G  ++  EV  +    H NL++L G+C     R+L+Y +MA GSV + L  +     PL W  R +IA G+A+GLA+LH+  +  +I+RD K +NILLD ++ A + DFGLAK     D +HV+T + GT G+ APEY+ TG
Sbjct:  277 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTL-------VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTG 467          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.874e-27
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 3
Query:   72 DSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL-PLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            D      +   Y  +R  T  F ++  +       VYKG  S           VAVK     +S QG  E+  EV+ +  L H NLV+L+G+      R+L+YE+M   S++  LF       L W+ R K+  G A+G+ +LH+  +  +I+RD K SNILLD D N  L+DFGLA+          ++RI+GT+GY APEY + G  +
Sbjct:  316 DDITTESLQLDYRMIRAATNKFSENNKIGQGGFGEVYKGTFSNGTE-------VAVK-RLSKSSGQGDTEFKNEVVVVAKLQHRNLVRLLGFSIGGGERILVYEYMPNKSLDYFLFDPAKQNQLDWTRRYKVIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKLADFGLARIFGMDQTQENTSRIVGTFGYMAPEYAIHGQFS 517          

HSP 2 Score: 27.7202 bits (60), Expect = 2.874e-27
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGV++LEI
Sbjct:  514 GQFSVKSDVYSFGVLVLEI 532          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
ACCR3_ARATH7.659e-2834.43Putative serine/threonine-protein kinase-like prot... [more]
Y1677_ARATH8.393e-2845.91Probable LRR receptor-like serine/threonine-protei... [more]
WAKLO_ARATH1.096e-2735.35Wall-associated receptor kinase-like 14 OS=Arabido... [more]
CRK12_ARATH1.301e-2735.18Putative cysteine-rich receptor-like protein kinas... [more]
WAKLF_ARATH1.302e-2733.66Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
CRK7_ARATH1.870e-2733.19Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]
WAKLI_ARATH2.202e-2736.95Wall-associated receptor kinase-like 22 OS=Arabido... [more]
SRF8_ARATH2.442e-2733.66Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
BAK1_ARATH2.442e-2737.19BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
CRK15_ARATH2.874e-2734.76Cysteine-rich receptor-like protein kinase 15 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
back to top