CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.234e-36
Identity = 81/202 (40.10%), Postives = 116/202 (57.43%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F + E+   T  F +  +L       VYKG + +  +       VAVK      S QG  E+  E+  L  L H +LV LIGYC E    +L+YE+MA G + ++L+   L PL W  R++I  GAA+GL +LH  A + +I+RD KT+NILLD +  A ++DFGL+K GP  D++HVST + G++GY  PEY     LT +
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTK-------VAVK-RGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEK 691          

HSP 2 Score: 27.7202 bits (60), Expect = 4.234e-36
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL+E+
Sbjct:  691 KSDVYSFGVVLMEV 704          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.236e-36
Identity = 83/206 (40.29%), Postives = 125/206 (60.68%), Query Frame = 3
Query:   87 PLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAE-KPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            PL+A     ++  T +F ++R +       VYKG    +L +G +   VAVK      S QG  E+  E+  L    H +LV LIGYC E+   +L+YE+M  G+++++L+   LL L W  R++I  G+A+GL +LH  + KPVI+RD K++NILLD +  A ++DFGL+K GPE D++HVST + G++GY  PEY     LT +
Sbjct:  471 PLVA-----VKEATNSFDENRAIGVGGFGKVYKG----ELHDGTK---VAVK-RANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEK 663          

HSP 2 Score: 26.1794 bits (56), Expect = 4.236e-36
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVV+ E+
Sbjct:  663 KSDVYSFGVVMFEV 676          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 89/220 (40.45%), Postives = 127/220 (57.73%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF--SKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR-------VMCTALVS 725
            +FT  +++  T NF  +  +       VYKG +++ +        +AVK      S QG+RE++ E+  +  L HPNLVKL G C E +  +L+YE++   S+   LF   K  L L WS R K+  G AKGLA+LHE  +  +++RD K +N+LLD   NA +SDFGLAK   E + +H+STRI GT GY APEY M G+LT +       V+C  +VS
Sbjct:  654 SFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMT-------IAVK-QLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEE-ENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVS 864          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.411e-36
Identity = 89/220 (40.45%), Postives = 127/220 (57.73%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF--SKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR-------VMCTALVS 725
            +FT  +++  T NF  +  +       VYKG +++ +        +AVK      S QG+RE++ E+  +  L HPNLVKL G C E +  +L+YE++   S+   LF   K  L L WS R KI  G AKGLA+LHE  +  +++RD K +N+LLD   NA +SDFGLAK   + + +H+STRI GT GY APEY M G+LT +       V+C  +VS
Sbjct:  656 SFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMT-------IAVK-QLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLN-DDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVS 866          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.067e-35
Identity = 82/202 (40.59%), Postives = 118/202 (58.42%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F++ E++  T NF + RVL       VY+G I     +      VA+K      S QG  E+  E+  L  L H +LV LIGYC E+   +L+Y++MA G++  +L+      LPW  R++I  GAA+GL +LH  A+  +I+RD KT+NILLD  + A +SDFGL+K GP  D +HVST + G++GY  PEY     LT +
Sbjct:  524 FSFAEIKAATKNFDESRVLGVGGFGKVYRGEIDGGTTK------VAIK-RGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLYKTQNPSLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEK 718          

HSP 2 Score: 25.7942 bits (55), Expect = 2.067e-35
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  698 QSDVYSFGVVLLE 736
            +SDVYSFGVVL E
Sbjct:  718 KSDVYSFGVVLFE 730          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.068e-35
Identity = 91/227 (40.09%), Postives = 130/227 (57.27%), Query Frame = 3
Query:   30 KLPSNPEEVEDLRRD-SAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL-LPLPWSIRMKIAFGAAKGLAFLHEAEKPV-IYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            K PS+   +   R + S  N     TY E+ ++T NF  +RV+       VY G++++  +       VAVKV    +S QG++E+ AEV  L  + H NLV L+GYC E  H  LIYE+MA G ++++L  K     L W  R+ IA   A GL +LH   KP+ ++RD K+ NILLD  + A L+DFGL++    G++SHVST ++GT GY  PEY  T  LT +
Sbjct:  539 KRPSSIRALHPSRANLSLENKKRRITYSEILLMTNNF--ERVIGEGGFGVVYHGYLNDSEQ-------VAVKVLSPSSS-QGYKEFKAEVELLLRVHHINLVSLVGYCDEQAHLALIYEYMANGDLKSHLSGKHGDCVLKWENRLSIAVETALGLEYLHSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVVGTPGYLDPEYYRTYRLTEK 755          

HSP 2 Score: 28.4906 bits (62), Expect = 2.068e-35
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFG+VLLEI
Sbjct:  755 KSDVYSFGIVLLEI 768          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35
Identity = 89/204 (43.63%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL--PLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FT  +L + T  F    VL       VY+G +       +    VAVK    +N  Q  +E+  EV  +GH+ H NLV+L+GYC E  HR+L+YE++  G++E  L   +     L W  RMKI  G A+ LA+LHEA +P V++RD K SNIL+D ++NA LSDFGLAK    G+ SH++TR+MGT+GY APEY  TG L  +
Sbjct:  171 FTLRDLELATNRFAPVNVLGEGGYGVVYRGKL-------VNGTEVAVKKLL-NNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGE-SHITTRVMGTFGYVAPEYANTGLLNEK 365          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.505e-35
Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   33 LPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVK-VHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF---SKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRV 704
            LP   E  ++++   A N LI+     LR +T NF  D +L       VYKG    +L +G +   +AVK + +G  + +G  E+ +E+  L  + H +LV L+GYC +   ++L+YE+M +G++  +LF    + L PL W  R+ +A   A+G+ +LH  A +  I+RD K SNILL  D  A ++DFGL +  PEG K  + TRI GT+GY APEY +TG +T +V
Sbjct:  556 LPGTSEVGDNIQMVEAGNMLISIQV--LRSVTNNFSSDNILGSGGFGVVYKG----ELHDGTK---IAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEG-KGSIETRIAGTFGYLAPEYAVTGRVTTKV 774          

HSP 2 Score: 26.1794 bits (56), Expect = 3.505e-35
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G   ++ DVYSFGV+L+E+
Sbjct:  768 GRVTTKVDVYSFGVILMEL 786          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.955e-35
Identity = 74/204 (36.27%), Postives = 123/204 (60.29%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +  ++ EL+  T NF +  V+       V++G + ++ +       VAVK      S QG  E+L+E+  L  + H +LV L+GYC E    +L+YE+M +G ++++L+     PL W  R+++  GAA+GL +LH  + + +I+RD K++NILLD +Y A ++DFGL++ GP  D++HVST + G++GY  PEY     LT +
Sbjct:  475 LRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTK-------VAVK-RGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNPPLSWKQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGLSRSGPCIDETHVSTGVKGSFGYLDPEYFRRQQLTDK 670          

HSP 2 Score: 26.9498 bits (58), Expect = 5.955e-35
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL E+
Sbjct:  670 KSDVYSFGVVLFEV 683          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.227e-34
Identity = 86/207 (41.55%), Postives = 119/207 (57.49%), Query Frame = 3
Query:   87 PLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS--KVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPV--IYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            P   FT  +++  T +F     +       V+KG +++          VAVK      S QG+RE+L E+  +  L HPNLVKL G+C E    +L YE+M   S+ + LFS     +P+ W  R KI  G AKGLAFLHE E P+  ++RD K +NILLD D    +SDFGLA+   E +K+H+ST++ GT GY APEY + G+LT
Sbjct:  665 PSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGR-------VVAVK-QLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSSALFSPKHKQIPMDWPTRFKICCGIAKGLAFLHE-ESPLKFVHRDIKATNILLDKDLTPKISDFGLARLDEE-EKTHISTKVAGTIGYMAPEYALWGYLT 861          

HSP 2 Score: 25.409 bits (54), Expect = 2.227e-34
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            ++DVYSFGV++LEI
Sbjct:  863 KADVYSFGVLVLEI 876          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
THE1_ARATH4.234e-3640.10Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y5597_ARATH4.236e-3640.29Probable receptor-like protein kinase At5g59700 OS... [more]
Y5344_ARATH4.909e-3640.45Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH6.411e-3640.45Probable LRR receptor-like serine/threonine-protei... [more]
FERON_ARATH2.067e-3540.59Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y5169_ARATH2.068e-3540.09Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH2.436e-3543.63Probable receptor-like protein kinase At2g42960 OS... [more]
TMK1_ARATH3.505e-3537.99Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y5241_ARATH5.955e-3536.27Probable receptor-like protein kinase At5g24010 OS... [more]
RKF1_ARATH2.227e-3441.55Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
back to top