CX297504

Overview
NameCX297504
Unique NameCX297504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMP_PEA (Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.532e-75
Identity = 136/203 (67.00%), Postives = 163/203 (80.30%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQS 611
            DPNLTYAK+LV  M        +  P+FGAA+DGD DRNMILG  FFVTPSDSVA+IAANA E+IPYF   +KG+ARSMPTS ALD VA+ LNL FFEVPTGWKFFGNLMD G  SICGEESFGTGSDHIREKDGIWAVLAWLSI+AH+NK+   G KLV+V D+V++HWATYGR++++RYDYE  ++  A +++  L ++ S
Sbjct:  323 DPNLTYAKDLVKIM------YAENGPDFGAASDGDGDRNMILGTSFFVTPSDSVAVIAANAKEAIPYFKDSIKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRELLS 519          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMP_BRANA (Phosphoglucomutase, chloroplastic OS=Brassica napus GN=PGMP PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.234e-74
Identity = 136/198 (68.69%), Postives = 161/198 (81.31%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANL 596
            DPNLTYAK+LV  M       +D+ P+FGAA+DGD DRNM+LG +FFVTPSDSVAIIAANA E+IPYF AG KG+ARSMPTS ALD VA+ L L FFEVPTGWKFFGNLMD G  SICGEESFGTGSDHIREKDGIWAVLAWLSILAH+ K+   G KLV+V D+V ++WATYGR++++RYDYE  ++  A +++  L
Sbjct:  326 DPNLTYAKDLVDVM------YRDDGPDFGAASDGDGDRNMVLGNKFFVTPSDSVAIIAANAQEAIPYFRAGPKGLARSMPTSGALDRVAEKLKLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRIKDKKPGEKLVSVADVVNEYWATYGRNFFSRYDYEECESEGANKMIEYL 517          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMP_SOLTU (Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.175e-70
Identity = 130/198 (65.66%), Postives = 156/198 (78.79%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANL 596
            DPNLTYA++LV  +        +  P+FGAA+DGD DRNMILG+ FFVTPSDSVAIIAA    +I YF +G KG+ARSMPTS +LD VA+ LNL FFEVPTGWKFFGNLMD G  SICGEESFGTGSDHIREKDGIWAVLAWLSILA++NK+   G KLV+V D+V+ HWATYGR++++RYDYE  ++  A  ++  L
Sbjct:  329 DPNLTYAEDLVNIL------YGENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAIIAAQCQYAIHYFQSGPKGLARSMPTSGSLDRVAQKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAYRNKDKKSGEKLVSVADVVKDHWATYGRNFFSRYDYEECESEGANNMIEYL 520          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_DICDI (Phosphoglucomutase-1 OS=Dictyostelium discoideum GN=pgmA PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.136e-69
Identity = 132/233 (56.65%), Postives = 168/233 (72.10%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVS-KVVNADEFEYK 695
            DPNLTYA  LV +M  G+        + G A+DGD DRNMILGKRFF+ PSDSVA+IA+N  ++IPYF+  GLKG+ARSMPTSAAL+ VA +L + FFEVPTGWKFFGNLMD G  SICGEESFGTGSDHIREKDGIWA++ WL IL H N+   D    V++E+IV++HWA YGR+YY+RYDYE +D   A+ +M ++ +   S   +     GI   +  ++ + D+FEYK
Sbjct:  263 DPNLTYAPLLVKKMNNGEF-------DMGCASDGDGDRNMILGKRFFLNPSDSVAVIASN-YKAIPYFNKGGLKGLARSMPTSAALERVATDLKVPFFEVPTGWKFFGNLMDAGTLSICGEESFGTGSDHIREKDGIWAIICWLQILTHHNQSTND-KNFVSIEEIVKQHWAKYGRNYYSRYDYEEIDTAPAEAMMKHVSQQIESKQLIGKKFTGISDSLEYEIASCDDFEYK 486          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM2_PARTE (Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=pp63-2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.551e-67
Identity = 134/229 (58.52%), Postives = 161/229 (70.31%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVK--------MQSSLPEVNDIVKGICSDVSK 665
            DPNLTYA +LV  + + K       P+FGAA DGDADRNMILG++FFVTPSDS+A+IAANA      F  GL G ARSMPTS ALD VA    +K FE PTGWKFFGNLMD GL ++CGEESFGTGS+HIREKDGIWAVLAWL+ILAHKNK N D    VTVE+IV ++W  +GR+YY+RYDYE VD+  A ++M +L           Q +  ++ D V  +   VSK
Sbjct:  276 DPNLTYAHDLVELLDIHKKKDVGAVPQFGAACDGDADRNMILGRQFFVTPSDSLAVIAANANL---IFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNK-NTD--HFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_PARTE (Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=pp63-1 PE=1 SV=4)

HSP 1 Score: 253.447 bits (646), Expect = 8.551e-67
Identity = 134/229 (58.52%), Postives = 161/229 (70.31%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVK--------MQSSLPEVNDIVKGICSDVSK 665
            DPNLTYA +LV  + + K       P+FGAA DGDADRNMILG++FFVTPSDS+A+IAANA      F  GL G ARSMPTS ALD VA    +K FE PTGWKFFGNLMD GL ++CGEESFGTGS+HIREKDGIWAVLAWL+ILAHKNK N D    VTVE+IV ++W  +GR+YY+RYDYE VD+  A ++M +L           Q +  ++ D V  +   VSK
Sbjct:  276 DPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQFFVTPSDSLAVIAANANL---IFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNK-NTD--HFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_RHIRD (Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.847e-62
Identity = 127/230 (55.22%), Postives = 160/230 (69.57%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNL +AKEL   +         E P+FGAA+DGD DRNM++GK  FVTPSDS+AIIAANA +  P ++AG+ G+ARSMPTSAA D VA+ L L  +E PTGWKFFGNLMD G  +ICGEESFGTGS+H+REKDG+WAVL WL+I+A + +         +V+DIV KHWA YGR+YY+R+DYE VD+ AA  L+A L +  ++LP       G      KV  AD+F Y
Sbjct:  250 DPNLVHAKELYDDV------MSPEGPDFGAASDGDGDRNMVVGKGMFVTPSDSLAIIAANA-KLAPGYAAGISGIARSMPTSAAADRVAEKLGLGMYETPTGWKFFGNLMDAGKVTICGEESFGTGSNHVREKDGLWAVLYWLNIVAARKE---------SVKDIVTKHWAEYGRNYYSRHDYEEVDSDAANTLVAILREKLATLP-------GTSYGNLKVAAADDFAY 456          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_MACFA (Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM1 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.480e-60
Identity = 129/232 (55.60%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +         +VEDI++ HW  YGR+++TRYDYE V+A  A ++M +L  +      V          V  V  AD FEY
Sbjct:  263 DPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSA-NDKVYTVEKADNFEY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_HUMAN (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.480e-60
Identity = 129/232 (55.60%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +         +VEDI++ HW  YGR+++TRYDYE V+A  A ++M +L  +      V          V  V  AD FEY
Sbjct:  263 DPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSA-NDKVYTVEKADNFEY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.480e-60
Identity = 129/232 (55.60%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +         +VEDI++ HW  YGR+++TRYDYE V+A  A ++M  L  + S    V      +   V  V   D FEY
Sbjct:  263 DPNLTYAADLVETMKTGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFP-VGDKVYTVEKIDNFEY 476          
The following BLAST results are available for this feature:
BLAST of CX297504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGMP_PEA8.532e-7567.00Phosphoglucomutase, chloroplastic OS=Pisum sativum... [more]
PGMP_BRANA4.234e-7468.69Phosphoglucomutase, chloroplastic OS=Brassica napu... [more]
PGMP_SOLTU2.175e-7065.66Phosphoglucomutase, chloroplastic OS=Solanum tuber... [more]
PGM1_DICDI9.136e-6956.65Phosphoglucomutase-1 OS=Dictyostelium discoideum G... [more]
PGM2_PARTE8.551e-6758.52Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=... [more]
PGM1_PARTE8.551e-6758.52Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=... [more]
PGM_RHIRD2.847e-6255.22Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm... [more]
PGM1_MACFA3.480e-6055.60Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM... [more]
PGM1_HUMAN3.480e-6055.60Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 ... [more]
PGM1_BOVIN3.480e-6055.60Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06002B11SK RindPdig24 Citrus clementina cDNA clone C06002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297504 ID=CX297504; Name=CX297504; organism=Citrus clementina; type=EST; length=718bp
CAGATCCCAATTTGACTTATGCAAAAGAGTTGGTTGCTCGTATGGGATTG
GGTAAATCAAACACTCAAGATGAACCGCCAGAGTTTGGTGCTGCTGCTGA
TGGTGATGCGGATCGTAACATGATCCTTGGCAAAAGGTTTTTTGTTACTC
CATCAGATTCAGTTGCCATCATTGCTGCAAATGCAGTTGAATCCATACCC
TACTTTTCTGCTGGTTTGAAGGGAGTTGCCAGGAGTATGCCAACCTCAGC
TGCCCTAGATGTTGTAGCCAAGAACTTGAATTTGAAGTTCTTTGAGGTAC
CAACAGGGTGGAAATTTTTTGGTAATTTGATGGATGATGGGTTATGTTCA
ATTTGTGGGGAAGAAAGTTTTGGAACTGGCTCAGACCATATACGTGAGAA
AGATGGAATCTGGGCTGTTCTGGCCTGGTTATCCATTCTTGCTCATAAAA
ATAAGGAAAACCTTGATGGGGGAAAGCTTGTGACAGTTGAAGATATAGTT
CGCAAGCATTGGGCTACTTATGGTCGCCACTACTACACTCGATATGACTA
TGAGAATGTGGATGCAGGTGCAGCAAAGGAATTGATGGCAAATTTGGTCA
AAATGCAGTCTTCACTTCCTGAAGTTAATGATATTGTGAAGGGGATCTGT
TCAGATGTGTCGAAGGTTGTCAATGCAGACGAATTTGAATACAAGATCCT
GTTGATGGTTCCATCTCA
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