CX297504

Overview
NameCX297504
Unique NameCX297504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_MOUSE (Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.012e-59
Identity = 128/232 (55.17%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +         +VEDI++ HW  +GR+++TRYDYE V+A  A ++M +L  +      V          V  V  AD FEY
Sbjct:  263 DPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSA-NDKVYTVEKADNFEY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.727e-59
Identity = 128/232 (55.17%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +         +VEDI++ HW  +GR+++TRYDYE V+A  A ++M +L  +      V          V  V  AD FEY
Sbjct:  263 DPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSA-NDKVYTVEKADNFEY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.256e-59
Identity = 128/232 (55.17%), Postives = 152/232 (65.52%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA +LV  M  G+        +FGAA DGD DRNMILGK  FFV PSDSVA+IAAN + SIPYF   G++G ARSMPTS ALD VA    +  +E PTGWKFFGNLMD    S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +          VEDI++ HW  +GR+++TRYDYE V+A  A ++M +L  +      V          V  V  AD FEY
Sbjct:  263 DPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIASYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQR---------VEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSA-NDKVYTVEKADNFEY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_DROSI (Phosphoglucomutase OS=Drosophila simulans GN=Pgm PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.494e-58
Identity = 120/232 (51.72%), Postives = 156/232 (67.24%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYAK+LV  +  G         + GAA DGD DRNMI+G K FFVTPSDS+A+IA + +E+IPYF   G++G ARSMPT++A+D+V + L  + FEVPTGWK+FGNLMD G   +CGEESFGTGS+HIREKDGIWAVLAW+S++ H  K          +EDI+++HW+ YGR+Y+TRYDYE   +    E++A + K  ++ PE             KV  AD F Y
Sbjct:  263 DPNLTYAKDLVDTVAQGDY-------DIGAAFDGDGDRNMIIGSKAFFVTPSDSLAVIA-HYLEAIPYFQKNGVQGFARSMPTASAVDLVGRKLGKEVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWAVLAWISVMQHTGK---------GIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITA-PEFVGKSYSSGGKTYKVKEADNFSY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_DROME (Phosphoglucomutase OS=Drosophila melanogaster GN=Pgm PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.494e-58
Identity = 120/232 (51.72%), Postives = 156/232 (67.24%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYAK+LV  +  G         + GAA DGD DRNMI+G K FFVTPSDS+A+IA + +E+IPYF   G++G ARSMPT++A+D+V + L  + FEVPTGWK+FGNLMD G   +CGEESFGTGS+HIREKDGIWAVLAW+S++ H  K          +EDI+++HW+ YGR+Y+TRYDYE   +    E++A + K  ++ PE             KV  AD F Y
Sbjct:  263 DPNLTYAKDLVDTVAQGDY-------DIGAAFDGDGDRNMIIGSKAFFVTPSDSLAVIA-HYLEAIPYFQKNGVQGFARSMPTASAVDLVGRKLGKEVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWAVLAWISVMQHTGK---------GIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITA-PEFVGKSYSSGGKTYKVKEADNFSY 476          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM5_MOUSE (Phosphoglucomutase-like protein 5 OS=Mus musculus GN=Pgm5 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.048e-56
Identity = 118/232 (50.86%), Postives = 150/232 (64.66%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA  L+  M  G+         FGAA D D DR MILG+  FFV+PSDS+AIIAAN +  IPYF   G++G  RSMPTS ALD VAK++ +  +E P GW+FF NLMD G CS+CGEESFGTGSDH+REKDG+WAVL WLSI+A + +         +VE+IVR HWA YGRHYY R+DYE ++  A   +M +L  + +    +      + S +  +   D FEY
Sbjct:  268 DPNLTYATTLLEAMKGGEYG-------FGAAFDADGDRYMILGQNGFFVSPSDSLAIIAAN-LSCIPYFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQ---------SVEEIVRDHWAKYGRHYYCRFDYEGLEPKATYYIMRDLEALVTDKSFIGQQF-AVGSHIYSIAKTDSFEY 481          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM5_HUMAN (Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.200e-56
Identity = 118/232 (50.86%), Postives = 149/232 (64.22%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA  L+  M  G+         FGAA D D DR MILG+  FFV+PSDS+AIIAAN +  IPYF   G++G  RSMPTS ALD VAK++ +  +E P GW+FF NLMD G C++CGEESFGTGSDH+REKDG+WAVL WLSI+A + +         +VE+IVR HWA +GRHYY R+DYE +D      +M +L  + +    +      + S V  V   D FEY
Sbjct:  268 DPNLTYATTLLEAMKGGEYG-------FGAAFDADGDRYMILGQNGFFVSPSDSLAIIAAN-LSCIPYFRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCNLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQ---------SVEEIVRDHWAKFGRHYYCRFDYEGLDPKTTYYIMRDLEALVTDKSFIGQQF-AVGSHVYSVAKTDSFEY 481          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_ASPFU (Phosphoglucomutase OS=Aspergillus fumigatus GN=pgmA PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.357e-54
Identity = 119/233 (51.07%), Postives = 156/233 (66.95%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVS--KVVNADEFEY 692
            DPNL YA ELV  +         +   FGAA+DGD DRNMI G   FV+P DS+AIIA +A + IP+F   G+ G+ARSMPTS A+D+VAK   L+ +EVPTGWKFF NL D+   SICGEESFGTGS+HIREKDG+WA++AWL+I+A   K+     +  ++  I  + W TYGR ++TRYDYENVD+ AA +L+ANL +      ++N+    + S VS  KV +A  F Y
Sbjct:  254 DPNLVYAHELVEAV-------DKKGIHFGAASDGDGDRNMIYGANTFVSPGDSLAIIAHHA-KLIPWFQKQGVYGLARSMPTSGAVDLVAKAQGLQSYEVPTGWKFFCNLFDNKKISICGEESFGTGSNHIREKDGVWAIVAWLNIIAGVAKQK--PNETPSIASIQNEFWQTYGRTFFTRYDYENVDSDAANKLIANLSE------KINNKDSFVGSTVSGRKVADAGNFAY 470          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_SCHPO (Probable phosphoglucomutase OS=Schizosaccharomyces pombe GN=SPBC32F12.10 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 119/232 (51.29%), Postives = 148/232 (63.79%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVND-IVKGICSDVSKVVNADEFEY 692
            DPNLTYAK LVAR+   + N        GAA+DGD DRNMI G   FVTPSDSVAIIA +A E IPYF   G+ G ARSMPTS A+D V K      +EVPTGWKFF NL D    SICGEESFGTGSDHIREKDG+W +L WL+ILA  N +N    K+ T+ D+ +  +  YGR +Y+RYDYE ++  AA ++M  +  +     +V + ++ G       V  A +FEY
Sbjct:  253 DPNLTYAKSLVARVD--RDNIV-----MGAASDGDGDRNMIYGANAFVTPSDSVAIIAHHA-ELIPYFRDGGVHGFARSMPTSGAIDRVGKYKGKNVYEVPTGWKFFCNLFDAKRLSICGEESFGTGSDHIREKDGVWGILCWLNILAGLNAQN---PKIKTLIDVKKDFYNIYGRTFYSRYDYEELENEAAGKVMDRMRAIADDKSKVGEAVLPGFV-----VSEAGDFEY 468          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_ASPOR (Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.325e-51
Identity = 116/232 (50.00%), Postives = 149/232 (64.22%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLV-KMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNL YA ELV  +     +       FGAA+DGD DRNMI G   FV+P DS+AII+ +A + IPYF   G+ G+ARSMPTS A+D+VAK   L+ +EVPTGWKFF NL D+   SICGEESFGTGS+HIREKDG+WA++AWL+I+A   KE  D  +  ++  I    W  YGR ++TRYDYENVD+  A +++A L  K+ +    V   V G      KV +   F Y
Sbjct:  254 DPNLVYAHELVEAVDKNGIH-------FGAASDGDGDRNMIYGANTFVSPGDSLAIISHHA-KLIPYFQKQGVYGLARSMPTSGAVDLVAKAQGLQSYEVPTGWKFFCNLFDNKKISICGEESFGTGSNHIREKDGLWAIVAWLNIIAGVAKEKPD--QTPSIASIQNDFWQAYGRTFFTRYDYENVDSDGANKVIAILSDKVANKDSFVGSTVSG-----RKVTDVGNFSY 470          
The following BLAST results are available for this feature:
BLAST of CX297504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGM1_MOUSE1.012e-5955.17Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 ... [more]
PGM1_RABIT1.727e-5955.17Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=P... [more]
PGM1_RAT2.256e-5955.17Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]
PGM_DROSI2.494e-5851.72Phosphoglucomutase OS=Drosophila simulans GN=Pgm P... [more]
PGM_DROME2.494e-5851.72Phosphoglucomutase OS=Drosophila melanogaster GN=P... [more]
PGM5_MOUSE1.048e-5650.86Phosphoglucomutase-like protein 5 OS=Mus musculus ... [more]
PGM5_HUMAN5.200e-5650.86Phosphoglucomutase-like protein 5 OS=Homo sapiens ... [more]
PGM_ASPFU6.357e-5451.07Phosphoglucomutase OS=Aspergillus fumigatus GN=pgm... [more]
PGM_SCHPO4.555e-5251.29Probable phosphoglucomutase OS=Schizosaccharomyces... [more]
PGM_ASPOR1.325e-5150.00Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06002B11SK RindPdig24 Citrus clementina cDNA clone C06002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297504 ID=CX297504; Name=CX297504; organism=Citrus clementina; type=EST; length=718bp
CAGATCCCAATTTGACTTATGCAAAAGAGTTGGTTGCTCGTATGGGATTG
GGTAAATCAAACACTCAAGATGAACCGCCAGAGTTTGGTGCTGCTGCTGA
TGGTGATGCGGATCGTAACATGATCCTTGGCAAAAGGTTTTTTGTTACTC
CATCAGATTCAGTTGCCATCATTGCTGCAAATGCAGTTGAATCCATACCC
TACTTTTCTGCTGGTTTGAAGGGAGTTGCCAGGAGTATGCCAACCTCAGC
TGCCCTAGATGTTGTAGCCAAGAACTTGAATTTGAAGTTCTTTGAGGTAC
CAACAGGGTGGAAATTTTTTGGTAATTTGATGGATGATGGGTTATGTTCA
ATTTGTGGGGAAGAAAGTTTTGGAACTGGCTCAGACCATATACGTGAGAA
AGATGGAATCTGGGCTGTTCTGGCCTGGTTATCCATTCTTGCTCATAAAA
ATAAGGAAAACCTTGATGGGGGAAAGCTTGTGACAGTTGAAGATATAGTT
CGCAAGCATTGGGCTACTTATGGTCGCCACTACTACACTCGATATGACTA
TGAGAATGTGGATGCAGGTGCAGCAAAGGAATTGATGGCAAATTTGGTCA
AAATGCAGTCTTCACTTCCTGAAGTTAATGATATTGTGAAGGGGATCTGT
TCAGATGTGTCGAAGGTTGTCAATGCAGACGAATTTGAATACAAGATCCT
GTTGATGGTTCCATCTCA
back to top