CX297504

Overview
NameCX297504
Unique NameCX297504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_EMENI (Phosphoglucomutase OS=Emericella nidulans GN=pgmB PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.037e-51
Identity = 113/231 (48.92%), Postives = 151/231 (65.37%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNL YA ELV  +     +       FGAA+DGD DRNMI G   FV+P DS+AIIA +A + IP+F   G+ G+ARSMPTS A+D VAK   L+ +EVPTGWKFF NL D+   SICGEESFGTGS+HIREKDG+WA++AWL+++A   ++     +  ++  I  + W TYGR ++TRYDYENVD+  A +L+A L   + ++   +  V    S   KVV++  F Y
Sbjct:  254 DPNLVYAHELVEAVDKNGIH-------FGAASDGDGDRNMIYGANTFVSPGDSLAIIAHHA-KLIPWFQKHGVDGLARSMPTSGAVDRVAKAQGLQSYEVPTGWKFFCNLFDNKKMSICGEESFGTGSNHIREKDGVWAIVAWLNVIAGVAEQK--PNETPSIASIQAEFWETYGRTFFTRYDYENVDSDGANKLIAAL--SEKAVDNKSSFVGSTISG-RKVVDSGNFAY 471          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_ENTHI (Phosphoglucomutase OS=Entamoeba histolytica GN=pgm PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 110/220 (50.00%), Postives = 143/220 (65.00%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLP-EVNDIVKGICSD 656
            DPNLTYA ELV  +       +D P + G A DGD DRN+I+G+  FV+PSDS+AI++      IP+F   G KGVARSMPTSAA+D V         E PTGWKFFGNLMD G  S+CGEESFGTG   IREKDGIWA L W+SILA +++      +LV V++I+  HWA YGR+YY RYD++ VD  AA+++M  +     ++  ++N +    C D
Sbjct:  262 DPNLTYAAELVHAV-----IPEDSPYDIGFAFDGDGDRNLIVGRGAFVSPSDSLAILSTK-YNDIPFFVKNGFKGVARSMPTSAAVDHVTS-----ITETPTGWKFFGNLMDSGKISLCGEESFGTGCCGIREKDGIWAALCWVSILAAESER---AQRLVGVKEILESHWAKYGRNYYQRYDFDEVDKKAAEDMMQMMRDNAKTVKCDLNGVPLKFCDD 467          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM_ENTDI (Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 110/220 (50.00%), Postives = 143/220 (65.00%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLP-EVNDIVKGICSD 656
            DPNLTYA ELV  +       +D P + G A DGD DRN+I+G+  FV+PSDS+AI++      IP+F   G KGVARSMPTSAA+D V         E PTGWKFFGNLMD G  S+CGEESFGTG   IREKDGIWA L W+SILA +++      +LV V++I+  HWA YGR+YY RYD++ VD  AA+++M  +     ++  ++N +    C D
Sbjct:  262 DPNLTYAAELVHAV-----IPEDSPYDIGFAFDGDGDRNLIVGRGAFVSPSDSLAILSTK-YNDIPFFVKNGFKGVARSMPTSAAVDHVTS-----ITETPTGWKFFGNLMDSGKISLCGEESFGTGCCGIREKDGIWAALCWVSILAAESER---AQRLVGVKEILENHWAKYGRNYYQRYDFDEVDKKAAEDMMQMMRDNAKTVKCDLNGVPLKFCDD 467          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM2_YEAST (Phosphoglucomutase-2 OS=Saccharomyces cerevisiae GN=PGM2 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 114/232 (49.14%), Postives = 145/232 (62.50%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYA  LV R+         E  EFGAA+DGD DRNMI G    FV+P DSVAIIA  A E IPYF+  G+ G+ARS PTS A+D VAK   L  +EVPTGWKFF  L D    SICGEESFGTGS+H+REKDG+WA++AWL+ILA  NK + +     +++ I  + WA YGR ++TRYD+E V+   A +++  L    +    VN        +  KV +  +F Y
Sbjct:  265 DPNLTYASSLVKRV-------DREKIEFGAASDGDGDRNMIYGYGPSFVSPGDSVAIIAEYAAE-IPYFAKQGIYGLARSFPTSGAIDRVAKAHGLNCYEVPTGWKFFCALFDAKKLSICGEESFGTGSNHVREKDGVWAIMAWLNILAIYNKHHPENE--ASIKTIQNEFWAKYGRTFFTRYDFEKVETEKANKIVDQLRAYVTKSGVVNSAFP--ADESLKVTDCGDFSY 484          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM1_YEAST (Phosphoglucomutase-1 OS=Saccharomyces cerevisiae GN=PGM1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.372e-48
Identity = 108/205 (52.68%), Postives = 141/205 (68.78%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYFSA-GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQS 611
            DPNLTYA+ LV R+         E   FGAA+DGD DRNMI G    FV+P DSVAIIA  A E IPYF+  G+ G+ARS PTS+A+D VA    L+ +EVPTGWKFF  L D    SICGEESFGTGS+HIREKDG+WA++AWL+ILA  ++ N +  K  +++ I  + W  YGR ++TRYDYE+++   A++++A L +  S
Sbjct:  266 DPNLTYARTLVDRV-------DREKIAFGAASDGDGDRNMIYGYGPAFVSPGDSVAIIAEYAPE-IPYFAKQGIYGLARSFPTSSAIDRVAAKKGLRCYEVPTGWKFFCALFDAKKLSICGEESFGTGSNHIREKDGLWAIIAWLNILAIYHRRNPE--KEASIKTIQDEFWNEYGRTFFTRYDYEHIECEQAEKVVALLSEFVS 460          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGM52_HUMAN (Putative PGM5-like protein 2 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALD 260
            DPNLTYA  L+  M  G+         FGAA D D DR MILG+  FFV+PSDS+AIIAAN +  IPYF   G++G  RSMPTS ALD
Sbjct:  207 DPNLTYAMTLLEAMKGGEYG-------FGAAFDADGDRYMILGQNGFFVSPSDSLAIIAAN-LSCIPYFRQMGVRGFGRSMPTSMALD 286          
The following BLAST results are available for this feature:
BLAST of CX297504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGM_EMENI5.037e-5148.92Phosphoglucomutase OS=Emericella nidulans GN=pgmB ... [more]
PGM_ENTHI8.591e-5150.00Phosphoglucomutase OS=Entamoeba histolytica GN=pgm... [more]
PGM_ENTDI8.591e-5150.00Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2... [more]
PGM2_YEAST7.273e-5049.14Phosphoglucomutase-2 OS=Saccharomyces cerevisiae G... [more]
PGM1_YEAST1.372e-4852.68Phosphoglucomutase-1 OS=Saccharomyces cerevisiae G... [more]
PGM52_HUMAN2.210e-1456.82Putative PGM5-like protein 2 OS=Homo sapiens PE=5 ... [more]

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Properties
Property NameValue
Genbank descriptionC06002B11SK RindPdig24 Citrus clementina cDNA clone C06002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297504 ID=CX297504; Name=CX297504; organism=Citrus clementina; type=EST; length=718bp
CAGATCCCAATTTGACTTATGCAAAAGAGTTGGTTGCTCGTATGGGATTG
GGTAAATCAAACACTCAAGATGAACCGCCAGAGTTTGGTGCTGCTGCTGA
TGGTGATGCGGATCGTAACATGATCCTTGGCAAAAGGTTTTTTGTTACTC
CATCAGATTCAGTTGCCATCATTGCTGCAAATGCAGTTGAATCCATACCC
TACTTTTCTGCTGGTTTGAAGGGAGTTGCCAGGAGTATGCCAACCTCAGC
TGCCCTAGATGTTGTAGCCAAGAACTTGAATTTGAAGTTCTTTGAGGTAC
CAACAGGGTGGAAATTTTTTGGTAATTTGATGGATGATGGGTTATGTTCA
ATTTGTGGGGAAGAAAGTTTTGGAACTGGCTCAGACCATATACGTGAGAA
AGATGGAATCTGGGCTGTTCTGGCCTGGTTATCCATTCTTGCTCATAAAA
ATAAGGAAAACCTTGATGGGGGAAAGCTTGTGACAGTTGAAGATATAGTT
CGCAAGCATTGGGCTACTTATGGTCGCCACTACTACACTCGATATGACTA
TGAGAATGTGGATGCAGGTGCAGCAAAGGAATTGATGGCAAATTTGGTCA
AAATGCAGTCTTCACTTCCTGAAGTTAATGATATTGTGAAGGGGATCTGT
TCAGATGTGTCGAAGGTTGTCAATGCAGACGAATTTGAATACAAGATCCT
GTTGATGGTTCCATCTCA
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