CX297531

Overview
NameCX297531
Unique NameCX297531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71BX_ARATH (Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=CYP71B36 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 50/160 (31.25%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  166 GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            G++  +++  I+ N+ +  I T+  ++ W + EL+ +P + KK+++E+   +G    IT  D  +L YL+ VI ET RL    P L+P   + + +L  Y +P ++++ VN W +  +P  WK              S ++A G  F  LPFG GRR CP
Sbjct:  284 GKLTRNHIKAILMNVLIGGIGTSAITMTWAMTELMRNPRVMKKVQSEIRNQIGKKSMITLDDIDQLHYLKMVINETWRLHPPSPFLIPRQVMSEFELNDYVIPVKTRLYVNVWAIGRDPDTWK--DPEEFLPERFVNSSIDAKGQHFELLPFGSGRRMCP 441          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71BW_ARATH (Cytochrome P450 71B35 OS=Arabidopsis thaliana GN=CYP71B35 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 50/159 (31.45%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  169 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            ++  +++  I+ ++ +A I+T+  ++ W + EL  +P + KK+++E+ T +G    I+  D  +L YL+ VIKET RL    PLL+P   + +  + GY +P ++++ VN W +  +P  WK              + ++A G  F  LPFG GRR CP
Sbjct:  284 KLTRNHIKAILLDVLLAGIDTSAITMTWAMTELARNPRVMKKVQSEIRTQMGNRSMISFEDMDQLEYLKMVIKETWRLHPTTPLLLPREAMSEFDINGYTIPVKTRLHVNVWAIGRDPDTWK--DPEVFLPERFMDNNIDAKGQHFELLPFGGGRRICP 440          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C75A7_EUSGR (Flavonoid 3',5'-hydroxylase OS=Eustoma grandiflorum GN=CYP75A7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 50/154 (32.47%), Postives = 84/154 (54.55%), Query Frame = 1
Query:  184 NVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKK-XXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            N+  ++ N+  A  +T+   IEW +AEL+ +P I ++ + E+D V+G   +  E D  KLPYLQA+ KE  R   + PL +P +     ++ G+ +P  +++ VN W +  +P+ W+               +K++  GNDF  +PFG GRR C
Sbjct:  294 NIKALLLNMFTAGTDTSSSVIEWALAELLKNPIILRRAQEEMDGVIGRDRRFLEADISKLPYLQAICKEAFRKHPSTPLNLPRIASQACEVNGHYIPKGTRLSVNIWAIGRDPSVWENPNEFNPDRFLERKNAKIDPRGNDFELIPFGAGRRIC 447          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C75A2_SOLME (Flavonoid 3',5'-hydroxylase OS=Solanum melongena GN=CYP75A2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  184 NVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKK-XXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            N+  ++ N+  A  +T+   IEW + E++ +P I KK + E+D ++G   +  E D   LPYL+A+ KE  R   + PL +P ++     + GY +P  +++ VN W +  +P  W+               +K+E  GNDF  +PFG GRR C
Sbjct:  293 NIKALLLNLFTAGTDTSSSVIEWALTEMMKNPTIFKKAQQEMDQIIGKNRRFIESDIPNLPYLRAICKEAFRKHPSTPLNLPRVSSDACTIDGYYIPKNTRLSVNIWAIGRDPDVWENPLEFIPERFLSEKNAKIEHRGNDFELIPFGAGRRIC 446          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 54/170 (31.76%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  145 ILDAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQ-ITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKK--XXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            +L  Q +  +  D++  I+ ++  A  +T+  ++E+ + EL+  P + KKL+ E+   +  G + +TE +   +  L+AVIKETLRL   +PLL+PH +L   ++ GY +PA ++++VNAW L  +   W++                 V+   N+F++L FG GRR CP
Sbjct:  313 LLSLQKEYGLTRDHIKAILIDMFEAGTDTSYMTLEFAMTELIRKPHLMKKLQEEVRRNVPAGQEMVTEDNLPGMTDLKAVIKETLRLHPPVPLLLPHYSLDACEVAGYTIPANTRVVVNAWALGRHSGYWERENEFVPERFLSGDVAGGVDLKPNEFQFLAFGSGRRMCP 482          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71B1_THLAR (Cytochrome P450 71B1 OS=Thlaspi arvense GN=CYP71B1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  169 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            E+  ++   I+ NI  A I+T+  ++ W +  L+ +P + KKL+ E+   +    +IT+ D  +L Y + V+KET R+   +P+LVP +   D K+ GYDVP ++ I VN W +  +P+ WK              ++ +  G +F  LPFG GRR CP
Sbjct:  281 ELTREHTKGILMNILTAGIDTSAQTMTWAMTHLLANPRVMKKLQAEIREKIKNIDEITDDDVEQLDYFKLVLKETFRISPIVPVLVPRVAAKDLKIAGYDVPEKTWIHVNMWAVHMSPSIWK--DPETFNPERFIDNQTDFKGLNFELLPFGSGRRMCP 437          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: CP17A_ORYLA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzias latipes GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 69/229 (30.13%), Postives = 110/229 (48.03%), Query Frame = 1
Query:   16 LKICKEVKERRLQLFKDYFVEERKKLASTKS-MSNESLKCAIDHILDAQTKGEIN--------------EDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDF-----RYLPFGVGRRSC 642
            LK C  V+++ LQ          KK    KS  S+   +  +D +L A+   E N              +D++L  V +I  A +ETT   ++W I  L+++PE+QK+++ ELD  +G        D   LP+L+A I+E LR+R   PLL+PH+ L D  LG + V   +++++N W L ++  +W                 + A+G+        YLPFG G R C
Sbjct:  239 LKQCVAVRDQLLQ----------KKFEEHKSDYSDHVQRDLLDALLRAKRSAENNNTAAEFSAEAVGLSDDHLLMTVGDIFGAGVETTTTVLKWAITYLIHYPEVQKQIQEELDRKVGVDRPPQLSDRGSLPFLEATIREVLRIRPVAPLLIPHVALSDTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRF------LSADGSSLTLPSSSYLPFGAGLRVC 451          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   46 RLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLV-PHMNLHDAKL-GGYDVPAESKILVNAWWLANNPAQW--KKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            R+Q F    ++E ++     +  N++    +D +L  +   ++ +D+++ I+  +     +TT    EW +AELV HP +Q ++R E+D  +G G   T+ D  ++PYLQAV+KETLR     PLL    +   D  L  G  VPA +  +VN W + ++ A W                 + V+  G D R  PFG GRR CP
Sbjct:  289 RVQTFVRGVIDEHRRRRQNSAALNDNADF-VDVLLSLEGDEKLGDDDMVAILWEMVFRGTDTTALLTEWCMAELVRHPAVQARVRAEVDAAVGAGGCPTDADVARMPYLQAVVKETLRAHPPGPLLSWARLATADVPLCNGMVVPAGTTAMVNMWAITHDAAVWADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCP 491          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71A4_SOLME (Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 63/208 (30.29%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   43 RRLQLFKDYFVEER--KKLASTKSMSNESLKCAIDHILDAQTKGE----INEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAK-LGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            ++L  F D  +EE   +      ++++E+ K  +D +L+ Q   E    +  D++  I+ +   A  +T   +++W +A+++  P   K L+NE+  +     +ITE D   + YL+AVIKE+LRL     LLVP  ++ D K LG Y +PA ++ L+N W +  +P  W+              + ++  G  F  LPFG GRR CP
Sbjct:  245 KKLDTFLDSVIEEHIIRNKKEEYAITDEA-KDFVDVLLEIQNGKETDFPLQRDSLKAILLDAFAAGTDTIYTNLDWTMADVLRQPRAMKTLQNEVRGLAQGKSEITEDDLKNMQYLRAVIKESLRLHPPNSLLVPRESMEDVKLLGYYHIPARTQALINVWAIGRDPLSWEN--PEEFCPERFLNNDIDMKGLKFELLPFGSGRRGCP 449          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 48/157 (30.57%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  172 INEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            + +D+++  V +I  A +ET+  +  W I  L++HPE+QKK++ E+D+ +G        D   + +L A I E LR++   PLL+PH+ L D+ +G Y +P  +++++N W + ++  +WK               K   + ++  YLPFG G R C
Sbjct:  290 LTDDHMVMTVADIFGAGVETSSTAFAWMIIYLIHHPEVQKKIQEEIDSNIGFERTPKMSDKGNMNFLNATIHEILRIQPVSPLLIPHVALADSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRFLDEDGKYVCSSSE-SYLPFGAGTRVC 445          
The following BLAST results are available for this feature:
BLAST of CX297531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
C71BX_ARATH1.418e-2131.25Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=C... [more]
C71BW_ARATH1.418e-2131.45Cytochrome P450 71B35 OS=Arabidopsis thaliana GN=C... [more]
C75A7_EUSGR1.852e-2132.47Flavonoid 3',5'-hydroxylase OS=Eustoma grandifloru... [more]
C75A2_SOLME1.852e-2131.82Flavonoid 3',5'-hydroxylase OS=Solanum melongena G... [more]
C71C4_MAIZE2.418e-2131.76Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C71B1_THLAR2.418e-2133.33Cytochrome P450 71B1 OS=Thlaspi arvense GN=CYP71B1... [more]
CP17A_ORYLA3.158e-2130.13Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzia... [more]
C78A1_MAIZE3.158e-2131.37Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C71A4_SOLME4.125e-2130.29Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71... [more]
CP17A_SQUAC9.190e-2130.57Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06002E04SK RindPdig24 Citrus clementina cDNA clone C06002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297531 ID=CX297531; Name=CX297531; organism=Citrus clementina; type=EST; length=712bp
TTCTTGAGAGGCTACTTGAAGATTTGTAAGGAAGTTAAAGAAAGGAGACT
CCAGCTCTTCAAGGACTACTTTGTTGAGGAGAGAAAGAAATTGGCAAGCA
CGAAGAGCATGAGTAATGAAAGCTTGAAATGCGCAATCGATCATATTTTG
GACGCTCAGACAAAGGGAGAAATCAACGAGGACAACGTTCTATACATCGT
TGAGAACATCAATGTTGCCGCGATCGAGACAACTCTTTGGTCGATCGAGT
GGGGAATTGCAGAGCTAGTGAATCATCCTGAAATCCAGAAGAAGCTCCGC
AATGAACTTGACACCGTGCTTGGTCCTGGTCATCAAATCACTGAGCCTGA
CACCCACAAACTACCCTACCTTCAGGCCGTGATCAAGGAAACTCTTCGCC
TTAGGATGGCAATTCCTCTTCTTGTGCCGCACATGAACCTTCACGACGCC
AAGCTTGGAGGCTACGACGTCCCTGCTGAGAGCAAAATCCTAGTGAACGC
GTGGTGGCTCGCCAACAATCCCGCCCAATGGAAGAAACCTGAAGAATTCA
GGCCTGAGAGGTTTTTGGAGGAGGAGTCCAAGGTTGAGGCTAATGGAAAT
GACTTCCGTTACCTTCCTTTCGGTGTTGGGAGAAGAAGCTGCCCTGGATT
ATCCTTGCTTTGCCAATTCTTGGTATCACTATTGGGCGTTTGGTACAGAA
CTTTGAGCTCTT
back to top