CX297531

Overview
NameCX297531
Unique NameCX297531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 62/214 (28.97%), Postives = 101/214 (47.20%), Query Frame = 1
Query:    4 LRGYLKICKEVKERRLQLFKDYFVEERKKL-ASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            L G+ KI +E     +  + D  ++ER K+    K    E        I D   +  +  D +   ++ + +AA +    ++EW IAE++N PEI  K   E+D V+G    + E D  KL Y++A+I+E  RL       +PH+ L D  + GY +P  S++L++ + L  NP  W               S+V    ND R++ F  G+R C
Sbjct:  267 LNGHEKIMRE-SSAIMDKYHDPIIDERIKMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAIAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGC 479          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  169 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            EI   ++  I  ++ V   +T+   +EW + EL+ HP+   +L+ E+ T+     +++E D   + YL+AVIKE LRL    P++ PH +  D KL  Y +PA +++++NAW +    A W               S V+  G +F  LPFG GRR CP
Sbjct:  275 EIERVSIKAITLDVFVGGSDTSFTLLEWAMTELLRHPKSLNRLQEEVRTICKGKSRVSEDDIQGMKYLKAVIKEALRLHPPFPMMAPHESTEDVKLRDYHIPAGTQVMMNAWAIGREVATWGPDAEEFKPERHLDTS-VDFRGQNFELLPFGAGRRICP 432          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71AD_ARATH (Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=CYP71A13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 59/215 (27.44%), Postives = 114/215 (53.02%), Query Frame = 1
Query:    4 LRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGP-GHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            +RG+    KEV  R      D  V+E  + ++ K+   + +   +    D  +  ++  +++ +++ ++ +    TT   +EW + EL+  P+  KKL++E+ + + P G  I E +   + YL+AVIKE LRL  ++P+++P +   D K+ GY++ A +++++NAW +  + A W               S ++ +G +  Y+PFG GRR CP
Sbjct:  231 IRGFNNKIKEVS-RGFSDLMDKVVQEHLEASNDKA---DFVDILLSIEKDKNSGFQVQRNDIKFMILDMFIGGTSTTSTLLEWTMTELIRSPKSMKKLQDEIRSTIRPHGSYIKEKEVENMKYLKAVIKEVLRLHPSLPMILPRLLSEDVKVKGYNIAAGTEVIINAWAIQRDTAIW-GPDAEEFKPERHLDSGLDYHGKNLNYIPFGSGRRICP 440          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 65/214 (30.37%), Postives = 99/214 (46.26%), Query Frame = 1
Query:    4 LRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQW-KKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            L G+ KI KE      +L      +  ++  S +    E     +  + DAQ    +  + V    ++I  AA++    ++EW +AE+VN+PE+  K   ELD V+G    + E D  KL Y++A I+E  RL    P  VPH+ L D  + GY VP  S ++++   L  NP  W +              S V    ND R++ F  GRR C
Sbjct:  280 LDGHEKIVKEANVAVNRLHDTVIDDRWRQWKSGERQEMEDFLDVLITLKDAQGNPLLTIEEVKAQSQDITFAAVDNPSNAVEWALAEMVNNPEVMAKAMEELDRVVGRERLVQESDIPKLNYVKACIREAFRLHPVAPFNVPHVALADTTIAGYRVPKGSHVILSRTGLGRNPRVWDEPLRFYPDRHLATAASDVALTENDLRFISFSTGRRGC 493          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71AG_ARATH (Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=CYP71A16 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 54/165 (32.73%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  151 DAQTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            D   + ++++ ++  I+  + + +  TT   IEW +  L+ +PE  KKL++E+ +V      ++  +   + YL+AVIKE LRL   +PLLVP +   D KL GYD+ A +++++NAW +  + A W               S  +  G +F+Y+PFG GRR CP
Sbjct:  277 DETAQCQLDKSDLKVIIFEMFLGSTTTTSAVIEWAMTRLMRNPECLKKLQDEIRSVSKMNSYVSGKEVENMNYLKAVIKEVLRLHPPLPLLVPRLLSEDVKLKGYDITAGTQVIINAWAIQRDTATWGS-DAQEFRPERHFDSTWDFVGRNFKYIPFGAGRRLCP 440          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 65/220 (29.55%), Postives = 103/220 (46.82%), Query Frame = 1
Query:    4 LRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENIN-------VAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            L G+ KI ++     +  + D  ++ R K      M  E  K  I+  LD     +  E N L   + I        +AA +    ++EW +AE+VN PEI +K   E+D V+G    + E D  KL Y++A+++E  RL       +PH+ L DA + GY +P  S++L++ + L  NP  W               S+V    ND R++ F  G+R C
Sbjct:  266 LNGHEKIMRD-SSAIMDKYHDPIIDARIK------MWREGKKTQIEDFLDIFISIKDEEGNPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMVNKPEILRKAMEEIDRVVGKERLVQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDATVAGYHIPKGSQVLLSRYGLGRNPKVWADPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGC 478          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 62/207 (29.95%), Postives = 112/207 (54.11%), Query Frame = 1
Query:   40 ERRLQLFKDYFVEER--KKLASTKSMSNESLKC-AIDHILDA--QTKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            E+  ++F++ F++ R  K+ + T+    E+     +D +LD   Q + E+  +++ +++ ++ VA  +T   ++EW + EL    E   K ++E+  V+G    + E D   LPYLQA++KETLRL  A P L+P  +  D ++ G+ VP  ++++VN W +  + + W+              + V+  G DF  +PFG GRR CP
Sbjct:  250 EKLFRVFQE-FIDARLAKRFSRTEKEPKEASSIDMLDSLLDLTQQNEAELTMNDLKHLLLDVFVAGTDTNSSTMEWAMTELFRSTEKMVKAQSEIRQVIGQNGFVQESDIPSLPYLQAIVKETLRLHPAAP-LIPRKSESDVQIMGFLVPKNTQVVVNVWAIGRDASVWENPMKFEPERFLLRETDVK--GRDFELIPFGSGRRMCP 452          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71D8_SOYBN (Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 58/212 (27.36%), Postives = 108/212 (50.94%), Query Frame = 1
Query:   28 KEVKERRLQLFKDYFVEERKKLASTK--SMSNESLKCAIDHILDAQTKGEINE----DNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            + V +R  ++ +D   +  +K    K  + S    +  +D +L  +  G +      +N+  ++ NI  A  +T+  ++EW ++E++ +P++++K + EL  +      I E D  +L YL++VIKETLRL      L+P   +    + GY++P ++K+++N W +  +P  W               S ++  GN F Y+PFG GRR CP
Sbjct:  237 EHVHQRADKILEDILRKHMEKRTRVKEGNGSEAEQEDLVDVLLRLKESGSLEVPMTMENIKAVIWNIFAAGTDTSASTLEWAMSEMMKNPKVKEKAQAELRQIFKGKEIIRETDLEELSYLKSVIKETLRLHPP-SQLIPRECIISTNIDGYEIPIKTKVMINTWAIGRDPQYWS--DADRFIPERFNDSSIDFKGNSFEYIPFGAGRRMCP 445          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 60/203 (29.56%), Postives = 101/203 (49.75%), Query Frame = 1
Query:   46 RLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG--EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQ-ITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCP 645
            +L  F  + ++E  K+  ++  SN  +   +D I  +   G  +I  D+++ ++ +I +  +     ++ W + EL  HP + KKLR E+   LGP  + ITE D  K+ YL+ VIKET RL    P L+P   + D ++ GY +P  + I ++ + +  +P  W               + +   G  +  LPFG GRRSCP
Sbjct:  245 KLTKFFQHVIDEELKIGQSQDHSN-LVSSMLDMINRSTEYGSFKITSDHLIAMMTDIVLGGVNAGTITMIWTMTELTRHPRVMKKLREEIRATLGPNKERITEEDLEKVEYLKLVIKETFRLHPPGPFLLPRQVMSDIEIQGYHIPKNAHIKISTYAIGRDPKCWTN--PEEFNPERFANTSINYKGQHYELLPFGAGRRSCP 444          
BLAST of CX297531 vs. ExPASy Swiss-Prot
Match: C75A6_CAMME (Flavonoid 3',5'-hydroxylase OS=Campanula medium GN=CYP75A6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 48/159 (30.19%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  169 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKK-XXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSC 642
            ++N  NV  ++ ++  A  +T+   IEW +AE++NH +I  +   E+D V+G   ++ + D   LPY QA+ KET R   + PL +P ++    ++ G+ +P  ++++VN W +  +P  W+               +K++  GN F  +PFG GRR C
Sbjct:  302 QLNLVNVKALLLDLFTAGTDTSSSVIEWALAEMLNHRQILNRAHEEMDQVIGRNRRLEQSDIPNLPYFQAICKETFRKHPSTPLNLPRISTEACEVDGFHIPKNTRLIVNIWAIGRDPKVWENPLDFTPERFLSEKHAKIDPRGNHFELIPFGAGRRIC 460          
The following BLAST results are available for this feature:
BLAST of CX297531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
C79B3_ARATH2.857e-2228.97Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
C71AP_ARATH2.857e-2233.33Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
C71AD_ARATH2.857e-2227.44Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=C... [more]
C79A1_SORBI3.731e-2230.37Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]
C71AG_ARATH3.731e-2232.73Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=C... [more]
C79B1_SINAL4.873e-2229.55Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
C76C3_ARATH4.873e-2229.95Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C71D8_SOYBN4.873e-2227.36Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=... [more]
C71B8_ARATH4.873e-2229.56Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]
C75A6_CAMME6.364e-2230.19Flavonoid 3',5'-hydroxylase OS=Campanula medium GN... [more]

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Properties
Property NameValue
Genbank descriptionC06002E04SK RindPdig24 Citrus clementina cDNA clone C06002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297531 ID=CX297531; Name=CX297531; organism=Citrus clementina; type=EST; length=712bp
TTCTTGAGAGGCTACTTGAAGATTTGTAAGGAAGTTAAAGAAAGGAGACT
CCAGCTCTTCAAGGACTACTTTGTTGAGGAGAGAAAGAAATTGGCAAGCA
CGAAGAGCATGAGTAATGAAAGCTTGAAATGCGCAATCGATCATATTTTG
GACGCTCAGACAAAGGGAGAAATCAACGAGGACAACGTTCTATACATCGT
TGAGAACATCAATGTTGCCGCGATCGAGACAACTCTTTGGTCGATCGAGT
GGGGAATTGCAGAGCTAGTGAATCATCCTGAAATCCAGAAGAAGCTCCGC
AATGAACTTGACACCGTGCTTGGTCCTGGTCATCAAATCACTGAGCCTGA
CACCCACAAACTACCCTACCTTCAGGCCGTGATCAAGGAAACTCTTCGCC
TTAGGATGGCAATTCCTCTTCTTGTGCCGCACATGAACCTTCACGACGCC
AAGCTTGGAGGCTACGACGTCCCTGCTGAGAGCAAAATCCTAGTGAACGC
GTGGTGGCTCGCCAACAATCCCGCCCAATGGAAGAAACCTGAAGAATTCA
GGCCTGAGAGGTTTTTGGAGGAGGAGTCCAAGGTTGAGGCTAATGGAAAT
GACTTCCGTTACCTTCCTTTCGGTGTTGGGAGAAGAAGCTGCCCTGGATT
ATCCTTGCTTTGCCAATTCTTGGTATCACTATTGGGCGTTTGGTACAGAA
CTTTGAGCTCTT
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