CX297689

Overview
NameCX297689
Unique NameCX297689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433S_HUMAN (14-3-3 protein sigma OS=Homo sapiens GN=SFN PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.648e-40
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   12 NLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD-LPEEGGE 416
            +LI  +   ES VFY KMKGDYYRYLAE    DD+K   D +             E+PPT+PIRLGLALNFSVF+YEI NSPE A  LAK  FDEA+A+L +L+E+SYKDSTLIMQLLRDNLTLWT+D   EEGGE
Sbjct:  106 HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGE 241          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433S_BOVIN (14-3-3 protein sigma OS=Bos taurus GN=SFN PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.648e-40
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   12 NLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD-LPEEGGE 416
            +LI  +   ES VFY KMKGDYYRYLAE    DD+K   D +             E+PPT+PIRLGLALNFSVF+YEI NSPE A  LAK  FDEA+A+L +L+E+SYKDSTLIMQLLRDNLTLWT+D   EEGGE
Sbjct:  106 HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGE 241          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14332_ENTHI (14-3-3 protein 2 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.704e-39
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 3
Query:   15 LIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEE 407
            L+ +STS ES VF+ KM+GDYYRY AEF   + RKE AD SL           S L PTHPIRLGLALNFSVFYY+I+N  ++AC LAK+AFDEAI +LD + EESYK+STLIMQLLRDNLTLWTSD+ ++
Sbjct:  108 LLKNSTSIESKVFFKKMEGDYYRYYAEFTVDEKRKEVADKSLAAYQEATDTAAS-LVPTHPIRLGLALNFSVFYYQIMNDADKACQLAKEAFDEAIQKLDEVPEESYKESTLIMQLLRDNLTLWTSDMGDD 237          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14332_ECHGR (14-3-3 protein homolog 2 OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.915e-37
Identity = 75/128 (58.59%), Postives = 92/128 (71.88%), Query Frame = 3
Query:   12 NLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD 395
            NLI      E+ +FYYKM GDYYRYLAE +  +   ++ + + +          +EL  THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI E+DS+ +E+YKDSTLIMQLLRDNLTLW+S+
Sbjct:  116 NLITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEAYQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWSSE 243          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14332_ECHMU (14-3-3 protein homolog 2 OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.034e-36
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   12 NLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD 395
            NLI      E+ +FYYKM GDYYRYLAE +  +   ++ + + +          +EL  THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI E+DS+ +E+YKDSTLIMQLLRDNLTLW S+
Sbjct:  116 NLITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEAYQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSE 243          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14331_SCHMA (14-3-3 protein homolog 1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.034e-36
Identity = 80/132 (60.61%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   15 LIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEG 410
            L+P+++  +S VF+ KM+GDYYRYLAE    D R E    SL           + LP THPIRLGLALNFSVF+YEI N   +AC LAK AFD AIAELD L ++SYKDSTLIMQLLRDNLTLW SD   EG
Sbjct:  116 LLPNASPDDSKVFFLKMQGDYYRYLAEVATDDARTEVVQKSLDAYTKATTAAEN-LPTTHPIRLGLALNFSVFFYEIQNDAAKACELAKSAFDSAIAELDQLQDDSYKDSTLIMQLLRDNLTLWASDQTAEG 246          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14331_ECHMU (14-3-3 protein homolog 1 OS=Echinococcus multilocularis PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 3
Query:   18 IPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD 395
            I      E+ +FYYKM GDYYRYLAE +  +   ++ + + +          +EL  THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI E+DS+ +E+YKDSTLIMQLLRDNLTLW S+
Sbjct:  114 ITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEANQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSE 239          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433_ENCCU (14-3-3 protein homolog OS=Encephalitozoon cuniculi GN=ECU03_1010 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.672e-35
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   39 ESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEG---GEQSKGD 431
            E  +F+ KMKGDYYRY AE     +  E + H+ +          + LPPT+PI+LGLALN+SVF+YEILN  E+AC +AK AFDEAI ELD+L+EE Y+DSTLIMQLLRDNLTLWTS   EEG   G++ KGD
Sbjct:  124 EYNIFFLKMKGDYYRYKAEVVTGPEHSEVSKHAAESYKEATEKAKT-LPPTNPIKLGLALNYSVFHYEILNDSEKACSIAKGAFDEAIKELDTLSEEHYRDSTLIMQLLRDNLTLWTS--REEGNVMGDEGKGD 254          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14331_ECHGR (14-3-3 protein homolog 1 OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.408e-35
Identity = 72/126 (57.14%), Postives = 88/126 (69.84%), Query Frame = 3
Query:   18 IPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD 395
            I      E+ +FYYKM GDYYRY AE +  +   ++ + + +          +EL  THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI E+DS+ +E+YKDSTLIMQLLRDNLTLW S+
Sbjct:  114 ITEKIGAEAKIFYYKMMGDYYRYSAEVQEGEQNDKSTEAAEEANQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSE 239          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 73/129 (56.59%), Postives = 84/129 (65.12%), Query Frame = 3
Query:   27 STSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 413
            S+  + T FY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI             AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:   41 SSIEQKTSFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI------------TAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 157          
The following BLAST results are available for this feature:
BLAST of CX297689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433S_HUMAN7.648e-4062.5014-3-3 protein sigma OS=Homo sapiens GN=SFN PE=1 S... [more]
1433S_BOVIN7.648e-4062.5014-3-3 protein sigma OS=Bos taurus GN=SFN PE=2 SV=... [more]
14332_ENTHI1.704e-3964.1214-3-3 protein 2 OS=Entamoeba histolytica PE=3 SV=... [more]
14332_ECHGR7.915e-3758.5914-3-3 protein homolog 2 OS=Echinococcus granulosu... [more]
14332_ECHMU1.034e-3658.5914-3-3 protein homolog 2 OS=Echinococcus multilocu... [more]
14331_SCHMA1.034e-3660.6114-3-3 protein homolog 1 OS=Schistosoma mansoni PE... [more]
14331_ECHMU1.493e-3557.9414-3-3 protein homolog 1 OS=Echinococcus multilocu... [more]
1433_ENCCU5.672e-3558.2114-3-3 protein homolog OS=Encephalitozoon cuniculi... [more]
14331_ECHGR7.408e-3557.1414-3-3 protein homolog 1 OS=Echinococcus granulosu... [more]
1433G_SHEEP1.001e-3156.5914-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004B11SK RindPdig24 Citrus clementina cDNA clone C06004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297689 ID=CX297689; Name=CX297689; organism=Citrus clementina; type=EST; length=763bp
GAGGTTGATGAAACCTAATCCCATCCTCCACATCTGGAGAATCAACCGTG
TTTTACTATAAGATGAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAA
AGGTGCTGATGATCGTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACG
AGGCTGCTACAGCTGCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATC
AGACTTGGCCTGGCTCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAA
CTCACCTGAGAGGGCTTGCCACCTGGCTAAACAAGCATTTGATGAGGCGA
TTGCTGAACTTGATAGCCTTAATGAAGAGTCCTACAAGGACAGCACCCTT
ATTATGCAGCTTCTTCGGGATAATCTCACCTTGTGGACCTCGGATCTACC
GGAGGAGGGAGGTGAGCAATCTAAAGGTGATGAAGTTCAAGCAGAGAGCT
AGCCGGGGATGCATGAGCATCAGGAGGAGAAATTGTGCTAGTTGGGTTCT
AATATCTATTAGTATTAGTAGTATAGGGATTGAAAGAACATTTGGCTTGT
ATAATACTTATTACATGTTTTTAATTTCAGGTTGTTGTGCTATTTTCTGT
TTACAAAAAAAAAAGGCCGCTCTTTGTGCTGCAGCTAGAGTATATAAATT
CTGAAAGAGAGTAAGCGACTAAGCGCTATAGAAAAGGACAAAAGAGAGAG
AGGCTGGAGAAATGGCTACTTGCTTGTGGATTCATCCGCATCAGCATCAG
CCTCAGCATCATC
back to top