CX297710

Overview
NameCX297710
Unique NameCX297710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length186
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_TOBAC (50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_SOLTU (50S ribosomal protein L2, chloroplastic OS=Solanum tuberosum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_SOLLC (50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_SOLBU (50S ribosomal protein L2, chloroplastic OS=Solanum bulbocastanum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  236 APIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  236 APIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  236 APIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  236 APIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.710e-15
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+PATPWGYPALGRRSRKRNKYS+NLILRRR+K
Sbjct:  236 APIGRKKPATPWGYPALGRRSRKRNKYSENLILRRRSK 273
The following BLAST results are available for this feature:
BLAST of CX297710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK2_TOBAC8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_SOLTU8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLLC8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLBU8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_PANGI8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Panax g... [more]
RK2_OENPA8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR8.710e-1592.1150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004D08SK RindPdig24 Citrus clementina cDNA clone C06004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297710 ID=CX297710; Name=CX297710; organism=Citrus clementina; type=EST; length=186bp
GATTCGGCCGAGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGG
TTATCCTGCACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATA
ATTTGATTCTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTT
CTTCGTTTTTACAATTTACAAAAAAAAAAAAAAAAA
back to top