CX297710

Overview
NameCX297710
Unique NameCX297710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length186
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 120
            APIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDIFILRRR 272
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_NUPAD (50S ribosomal protein L2, chloroplastic OS=Nuphar advena GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 120
            APIGRK+P TPWGYPALGRRSRKRNKYSD  ILRRR
Sbjct:  237 APIGRKKPTTPWGYPALGRRSRKRNKYSDIFILRRR 272
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_NASOF (50S ribosomal protein L2, chloroplastic OS=Nasturtium officinale GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_LOBMA (50S ribosomal protein L2, chloroplastic OS=Lobularia maritima GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_LEPVR (50S ribosomal protein L2, chloroplastic OS=Lepidium virginicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_DRANE (50S ribosomal protein L2, chloroplastic OS=Draba nemorosa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_CRUWA (50S ribosomal protein L2, chloroplastic OS=Crucihimalaya wallichii GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 126
            APIGRK+P TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct:  237 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274
The following BLAST results are available for this feature:
BLAST of CX297710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK2_NYMAL1.391e-1288.8950S ribosomal protein L2, chloroplastic OS=Nymphae... [more]
RK2_NUPAD1.391e-1288.8950S ribosomal protein L2, chloroplastic OS=Nuphar ... [more]
RK2_NASOF1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Nasturt... [more]
RK2_LOBMA1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Lobular... [more]
RK2_LEPVR1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Lepidiu... [more]
RK2_DRANE1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Draba n... [more]
RK2_CRUWA1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Crucihi... [more]
RK2_CAPBU1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Capsell... [more]
RK2_ARATH1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Arabido... [more]
RK2_ARAHI1.391e-1281.5850S ribosomal protein L2, chloroplastic OS=Arabis ... [more]

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Properties
Property NameValue
Genbank descriptionC06004D08SK RindPdig24 Citrus clementina cDNA clone C06004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297710 ID=CX297710; Name=CX297710; organism=Citrus clementina; type=EST; length=186bp
GATTCGGCCGAGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGG
TTATCCTGCACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATA
ATTTGATTCTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTT
CTTCGTTTTTACAATTTACAAAAAAAAAAAAAAAAA
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