CX297710

Overview
NameCX297710
Unique NameCX297710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length186
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.008e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   13 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 120
            APIGRKRP TPWGYPALG+RSRK+ +YSD  ILRRR
Sbjct:  237 APIGRKRPMTPWGYPALGKRSRKKKRYSDRFILRRR 272
[Close]
BLAST of CX297710 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.622e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   10 EAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRR 120
            + PIGRK+P TPWG+PALGR+SRKR KYSD LILRRR
Sbjct:  245 KVPIGRKKPLTPWGHPALGRKSRKRRKYSDTLILRRR 281
The following BLAST results are available for this feature:
BLAST of CX297710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK2_LEMMI2.008e-1180.5650S ribosomal protein L2, chloroplastic OS=Lemna m... [more]
RK2_ANEMR2.622e-1178.3850S ribosomal protein L2, plastid OS=Aneura mirabi... [more]

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Properties
Property NameValue
Genbank descriptionC06004D08SK RindPdig24 Citrus clementina cDNA clone C06004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297710 ID=CX297710; Name=CX297710; organism=Citrus clementina; type=EST; length=186bp
GATTCGGCCGAGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGG
TTATCCTGCACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATA
ATTTGATTCTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTT
CTTCGTTTTTACAATTTACAAAAAAAAAAAAAAAAA
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