CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_CAPAN (Histone H3.3 OS=Capsicum annuum PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.133e-61
Identity = 117/133 (87.97%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 6.207e-61
Identity = 116/133 (87.22%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP++GGVKKPHR++PGTVALREIRR+QKSTELL+RKLPFQRLVREIAQDFKSDLRFQSSA+ ALQE+ EAY+V LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 233.417 bits (594), Expect = 6.207e-61
Identity = 117/133 (87.97%), Postives = 127/133 (95.49%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP++GGVKKPHRY+PGTVALREIRRYQKSTELLIR+ PFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.107e-61
Identity = 117/133 (87.97%), Postives = 126/133 (94.74%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQL +KAA+K AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SA+ ALQE+ EAYLV+LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33_MEDSA2.133e-6188.72Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE2.133e-6188.72Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU2.133e-6188.72Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI2.133e-6188.72Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]
H33_CAPAN2.133e-6188.72Histone H3.3 OS=Capsicum annuum PE=2 SV=3[more]
H33_ARATH2.133e-6188.72Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 ... [more]
H32_LILLO2.133e-6187.97Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_GRIJA6.207e-6187.22Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3_CAEEL6.207e-6187.97Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H3L_XENLA8.107e-6187.97Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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