CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.285e-55
Identity = 106/133 (79.70%), Postives = 123/133 (92.48%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG KAPRKQLA+KAARK+AP +GGVKKPH+++PGTVALREIR+YQK+T+LLIRKLPFQRLVR+IA + KSD+RFQS AI ALQE+ EAYLV LFEDTNLCAIHA+RVTI +KD+ LARR+RG
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 3.897e-55
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTA KSTG KAPRKQLA+KAA K+AP+ GGVKKPH Y+PGTVAL EI RYQKSTELLI KLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRV+I  KDIQL RR+RG
Sbjct:    1 MARTKQTACKSTGRKAPRKQLATKAAHKSAPAMGGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.934e-54
Identity = 104/133 (78.20%), Postives = 122/133 (91.73%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKST  KAPRKQLA+KAARK+AP +GG+KKPH+++PGTVALREIR+YQK+T+LLIRKLPFQRLVR+IA + KSD+RFQS AI ALQE+ EAYLV LFEDTNLCAIHA+RVTI +KD+ LARR+RG
Sbjct:    1 MARTKQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.308e-54
Identity = 108/136 (79.41%), Postives = 119/136 (87.50%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAP---STGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG K PRK + SK A K  P   S+GGVKK HR++PGTVALREIR+YQKST+LLIRKLPFQRLVREIAQ+FK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDI LARR+RG
Sbjct:    1 MARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRG 136          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.627e-54
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG K PRK L +K+++K+ PST G+KK HR++PGTVALREIRRYQKS+ELLI+KLPFQRLVREIAQ+FK+DLRFQ++AI ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.823e-51
Identity = 101/133 (75.94%), Postives = 117/133 (87.97%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG K PRK L+SK++  + P    +KK HR++PGTVALREIRRYQKS++LLI+KLPFQRLVREIAQ+FK+DLRFQ++AI ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.098e-49
Identity = 105/133 (78.95%), Postives = 114/133 (85.71%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MA TKQTARKST GKAPRKQLA+KAA K+APSTGGVKK HRY+P TVAL EIRRY  STELLI KLPFQRLV+EIAQDFK+DLRFQS+AIGALQE+ EA  V LFEDTNLCAIHAK VT+  KDIQLA  + G
Sbjct:    1 MAHTKQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILG 132          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.118e-49
Identity = 98/121 (80.99%), Postives = 108/121 (89.26%), Query Frame = 2
Query:   80 GGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            GGKAPRKQLA+KAARK A   G VKKPHR++PGTVALREIRRYQKST+LL+RKLPFQRLVREIAQD K DLRFQS+AI ALQE+ E +LV LFEDTNLCAIHAKRVTI  KD+QLARR+RG
Sbjct:    4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 124          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.318e-46
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 2
Query:   77 TGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            TG KAPRK LA+KAARK AP+ GGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIA D+KSDLRFQSSA+ A+QE+ EAY+V LFEDTNLCAIHA RVTI
Sbjct:    2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTI 110          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 9.621e-46
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARK+ GG     +++ K A+        +KK HRYKPGTVALREIR+YQKST LLIRKLPFQRLVRE+AQD+KSDLRFQ+SA+ ALQE+ E+YLV+LFEDTNLCAIHAKRVTI  KDI LARR+RG
Sbjct:    1 MARTKQTARKTVGGDI-NSRISEKRAKSDNSKNIDLKKVHRYKPGTVALREIRKYQKSTNLLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDIYLARRIRG 132          
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33_TETTH2.285e-5579.70Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H3L_CAIMO3.897e-5582.71Histone H3-like OS=Cairina moschata PE=3 SV=2[more]
H34_TETTH1.934e-5478.20Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33A_DICDI4.308e-5479.41Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H33B_DICDI5.627e-5478.95Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H33C_DICDI5.823e-5175.94Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H3L_MOUSE1.098e-4978.95Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H33L3_CAEEL7.118e-4980.99Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H34_STYLE4.318e-4682.57Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3_GUITH9.621e-4671.43Histone H3 OS=Guillardia theta PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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