CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.814e-44
Identity = 90/112 (80.36%), Postives = 102/112 (91.07%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TGGKAPRK +A K A+K  AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAY+V LFEDTNLCAIHAKRVTI
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.370e-44
Identity = 91/112 (81.25%), Postives = 102/112 (91.07%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TGGKAPRK +A K A+K  AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.042e-44
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MAR+ QTARK+TGGKAP       A R    ST  +KKP+RYKPGTVALREIR+YQK+T+L+IRKLPFQRLV+EIAQ  K+DLRFQ+ A+ ALQE+ EA++V +FEDTNLCA+HAKR TI  KDIQLA+RLRG
Sbjct:    1 MARSNQTARKATGGKAPHF-----AMRVWQHSTPPLKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRG 128          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.279e-44
Identity = 87/111 (78.38%), Postives = 101/111 (90.99%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARK-AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TG KAPRK LA+KAARK AAP+  G+KKPHRY+PGTVALREIR+YQKST+LLIRKLPFQRLVREIA ++K+DLRFQSSA+ ALQE+ EAY++ LFEDTNLCAIH KRVTI
Sbjct:    1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTI 111          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQL 424
            MARTK TARKS GGKAPRK LA+KAARK  P  G VKK  RY+P + AL+EIR+YQKSTELL+RKLPFQRLVRE+AQ+   ++RFQS+AI AL E+ EAYL+ LFEDTNLCAIHAKRVTI  KD+Q+
Sbjct:    1 MARTKHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44
Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARKAAP--STGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TG KAPR+QLA+KAARK A    +GGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAY+V LFEDTNLCAIHAKRVTI
Sbjct:    1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.005e-44
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARKAAP--STGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TG KAPRKQLA+KAARK+    +  GVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI
Sbjct:    1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.620e-43
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TGGKAPRK +A K A+K  AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.620e-43
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2
Query:   74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403
            +TGGKAPRK +A K A+K  AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTI 112          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFED---TNLCAIHAK 391
            MARTK+TA KSTGGK PRKQL  +AA K+APST G+ KPHRY+PGTVALREIR YQKST  LIRKLPFQRLVREIAQDFK+DL+FQS+AI  LQE+ EAYLV   E    +NL  ++++
Sbjct:    1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQSAAIRTLQEASEAYLVVFLESKQHSNLARMYSQ 119          
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H36_STYLE1.814e-4480.36Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33_STYLE2.370e-4481.25Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3L4_ARATH4.042e-4468.42Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g1... [more]
H38_STYLE5.279e-4478.38Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33L1_CAEEL6.895e-4471.65Histone H3.3-like type 1 OS=Caenorhabditis elegans... [more]
H31_STYLE6.895e-4479.46Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H35_STYLE9.005e-4480.36Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H39_STYLE2.620e-4380.36Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H37_STYLE2.620e-4380.36Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3L_BOVIN1.139e-3869.75Histone H3-like OS=Bos taurus PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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