CX297751
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 1.814e-44 Identity = 90/112 (80.36%), Postives = 102/112 (91.07%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TGGKAPRK +A K A+K AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAY+V LFEDTNLCAIHAKRVTI Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.370e-44 Identity = 91/112 (81.25%), Postives = 102/112 (91.07%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TGGKAPRK +A K A+K AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3) HSP 1 Score: 177.563 bits (449), Expect = 4.042e-44 Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 2 Query: 44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442 MAR+ QTARK+TGGKAP A R ST +KKP+RYKPGTVALREIR+YQK+T+L+IRKLPFQRLV+EIAQ K+DLRFQ+ A+ ALQE+ EA++V +FEDTNLCA+HAKR TI KDIQLA+RLRG Sbjct: 1 MARSNQTARKATGGKAPHF-----AMRVWQHSTPPLKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRG 128
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.279e-44 Identity = 87/111 (78.38%), Postives = 101/111 (90.99%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARK-AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TG KAPRK LA+KAARK AAP+ G+KKPHRY+PGTVALREIR+YQKST+LLIRKLPFQRLVREIA ++K+DLRFQSSA+ ALQE+ EAY++ LFEDTNLCAIH KRVTI Sbjct: 1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTI 111
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3) HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44 Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2 Query: 44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQL 424 MARTK TARKS GGKAPRK LA+KAARK P G VKK RY+P + AL+EIR+YQKSTELL+RKLPFQRLVRE+AQ+ ++RFQS+AI AL E+ EAYL+ LFEDTNLCAIHAKRVTI KD+Q+ Sbjct: 1 MARTKHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44 Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARKAAP--STGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TG KAPR+QLA+KAARK A +GGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAY+V LFEDTNLCAIHAKRVTI Sbjct: 1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 9.005e-44 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARKAAP--STGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TG KAPRKQLA+KAARK+ + GVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIAQ++KSDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI Sbjct: 1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.620e-43 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TGGKAPRK +A K A+K AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.620e-43 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 2 Query: 74 STGGKAPRKQLASKAARK--AAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 403 +TGGKAPRK +A K A+K AA +TGGVKKPHR++PGTVALREIRR+QKSTELLIRKLPFQRLVREIA +FK+DLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTI 112
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38 Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 2 Query: 44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFED---TNLCAIHAK 391 MARTK+TA KSTGGK PRKQL +AA K+APST G+ KPHRY+PGTVALREIR YQKST LIRKLPFQRLVREIAQDFK+DL+FQS+AI LQE+ EAYLV E +NL ++++ Sbjct: 1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQSAAIRTLQEASEAYLVVFLESKQHSNLARMYSQ 119 The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 212
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bpback to top |