CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.538e-38
Identity = 80/135 (59.26%), Postives = 105/135 (77.78%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKA-APSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKS--DLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 439
            MARTKQ+ARK+TGGKAPRKQL++K+ARK  +P++    K  RY+PG+VAL+EIRRYQKST+ LIR+LPFQR  R + ++  +  D+RFQ  A+ ++QE++E YLV LFED  LCA HAKRVT+  KDI L  +LR
Sbjct:    1 MARTKQSARKTTGGKAPRKQLSAKSARKGVSPASSAGAKKSRYRPGSVALKEIRRYQKSTDFLIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDISLVLKLR 135          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.025e-36
Identity = 87/156 (55.77%), Postives = 101/156 (64.74%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPST-----------------------GGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MAR K  AR STGGKAPRKQLA KA RKAAP T                        GVK+PHRY+PG + LREIR+Y+K+    I KLPF RLVR+I Q+ K+ LRFQS+A+ A +E  EAYLV LFED    AIHAKRVT+  KDIQLAR + G
Sbjct:    1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 9.979e-35
Identity = 85/134 (63.43%), Postives = 95/134 (70.90%), Query Frame = 2
Query:   44 MARTK-QTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTK    R S       K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  KSDLRFQS+AI ALQE+ EAYLV LFEDTNLCAIHAKR+TI  KD+QLARR+RG
Sbjct:    1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRG 132          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.882e-33
Identity = 80/134 (59.70%), Postives = 98/134 (73.13%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR-YKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            M+RTK+TAR        ++ + SK ++KA     GVK+ HR ++PGT A+REIR++QKST LLI+  PFQRLVR + +  K  LRFQSSAI ALQE+ EAY+VSL  DTNL  IHAKRVTIQ KDIQLA RLRG
Sbjct:    1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRG 126          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPH----RYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK---SDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            + ++K  ++K+     P+     +   +A+    G   P     RY+PGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+QS AI ALQE+ EA+LV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    8 VTKSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKRRYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 2
Query:  149 VKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSD---LRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            VKK  RY+PGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+QS+AI ALQE+ E++L+ L EDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:  108 VKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 206          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 2
Query:  212 KSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            KSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 77          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 67/96 (69.79%), Postives = 82/96 (85.42%), Query Frame = 2
Query:  164 RYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKS---DLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            RY+PGT ALREIRRYQ+S+ELLIRKLPF RLV+E+A+++      +R+QS+A+ ALQE+ EA+LV L EDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.339e-30
Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTG---GVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 439
            M+RTKQTA K+ GGKAPRK +++K+     PS+G    + K  R+K G +AL+EIR+YQKST+LLIRK PFQR+VR++ +  +  +RFQ+SAI A QE+VE +L SL ED   C +HAKRVT+  KDI L  +++
Sbjct:    1 MSRTKQTASKALGGKAPRKGISAKSI----PSSGCSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIK 130          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.400e-30
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 2
Query:  164 RYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSD------LRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            RY+PGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F ++      LR+QS+A+  LQE+ EA+LV LFEDTNLCAIHAKRVTI  +D+QLARR+RG
Sbjct:   21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H31_ENCCU2.538e-3859.26Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]
H3L3_LILLO9.025e-3655.77Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
H3_ENTHI9.979e-3563.43Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H3_LEIIN1.882e-3359.70Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
CENPA_NEUCR7.907e-3252.14Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
CENPA_CANAL6.693e-3172.28Histone H3-like centromeric protein CSE4 OS=Candid... [more]
H33_HORVU2.544e-3087.01Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
CENPA_PICFA2.544e-3069.79Histone H3-like centromeric protein CSE4 OS=Pichia... [more]
H3L_ENCCU4.339e-3052.59Histone H3-like protein OS=Encephalitozoon cunicul... [more]
CENPA_SCHPO7.400e-3064.65Histone H3-like centromeric protein cnp1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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