CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.526e-41
Identity = 90/214 (42.06%), Postives = 129/214 (60.28%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            G+C    +RLL+Y FM+N S+ Y L E   G   L W  R ++A GAARGL YLH+ C P +IHRDVK++N+LLDE FEA + DFGLA+L+    T+VTT + GT+G+I PEY  +  ++ R DV+ +G++LLELVTG+R ++  +                  EKR   ++D  + +N N + V  M+++A  C    P  RP + EVV  LE
Sbjct:  815 GYCKHGNDRLLIYSFMENGSLDYWLHERVDGNMTLIWDVRLKIAQGAARGLAYLHKVCEPNVIHRDVKSSNILLDEKFEAHLADFGLARLLRPYDTHVTTDLVGTLGYIPPEYSQSLIATCRGDVYSFGVVLLELVTGRRPVEVCK--GKSCRDLVSRVFQMKAEKREAELIDTTIRENVNERTVLEMLEIACKCIDHEPRRRPLIEEVVTWLE 1026          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 84/216 (38.89%), Postives = 138/216 (63.89%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G+C +PT +LL+Y ++   S+   L   K GE  LDW +R  + +GAA+GL YLH  C+P+IIHRD+K++N+LLD + EA V DFGLAKL++  ++++TT V GT G++APEY+ +G+++E+TDV+ +G+++LE+++G+   D S                   E R   IVD +  +    + ++ ++ +A  C  +SP++RP M  VV++LE E
Sbjct:  365 GYCNSPTSKLLLYDYLPGGSLDEALH--KRGEQ-LDWDSRVNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKLPTDAS--FIEKGFNIVGWLNFLISENRAKEIVDLSC-EGVERESLDALLSIATKCVSSSPDERPTMHRVVQLLESE 574          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 81/214 (37.85%), Postives = 130/214 (60.75%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            GFC    +RLL+Y +M+N S+ Y L E   G  +L W TR R+A GAA+GL YLHE C+P I+HRD+K++N+LLDE+F + + DFGLA+L+   +T+V+T + GT+G+I PEY     ++ + DV+ +G++LLEL+T +R +D  +                  E R   + D  +    N +E+  ++++A LC   +P+ RP   ++V  L+
Sbjct:  795 GFCFYKNDRLLIYSYMENGSLDYWLHERNDGPALLKWKTRLRIAQGAAKGLLYLHEGCDPHILHRDIKSSNILLDENFNSHLADFGLARLMSPYETHVSTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCK--PKGCRDLISWVVKMKHESRASEVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQQLVSWLD 1006          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 87/217 (40.09%), Postives = 134/217 (61.75%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRL-REIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G C    + +LVY +++N  ++  L  + +     LDW TRK++ LG A+GL +LHE    KI+HRD+KA+NVLLD+D  A + DFGLAKL D   T+++T++ GT+G++APEY   G  +E+ DV+ +G++ LE+V+G+   +F R                 R   L+ +VD  L  +Y+ +E   M+ VAL+CT ASP  RP MS+VV ++EG+
Sbjct:  739 GCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNF-RPTEDFVYLLDWAYVLQERGSLLE-LVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEGK 953          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 85/215 (39.53%), Postives = 126/215 (58.60%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEG 652
            GFC    + LL Y +M+N S++  L   K  +  +DW TR ++  G A+GL +LHE    K +HRD+KA N+LLD+D    + DFGLA+L +  KT+++T+V GT+G++APEY   G  + + DV+ +G+++LE+V G    +F                       L  +VD  L    + +E E +I+VAL+C+ ASP DRP MSEVV MLEG
Sbjct:  742 GFCVERAQLLLAYEYMENNSLSSALFSPKHKQIPMDWPTRFKICCGIAKGLAFLHEESPLKFVHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHISTKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAGITNSNF--MGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDRKEAEAVIKVALVCSSASPTDRPLMSEVVAMLEG 954          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 84/216 (38.89%), Postives = 132/216 (61.11%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEG 652
            +G   T  E LLVY ++ N S+   L   K  +P L+W  R ++ LG A G+ YLHE  N +IIHRD+K +N+LL++DF   + DFGLA+L    KT+++T + GT+G++APEY+  GK +E+ DV+ +G++++E++TG+R   F +                 R   ++  VD  L  N+N  E   ++Q+ LLC QA+ + RPAMS VV+M++G
Sbjct:  383 LGCSITGPESLLVYEYIANQSLHDYLFVRKDVQP-LNWAKRFKIILGTAEGMAYLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGKRNNAFVQ----DAGSILQSVWSLYRTSNVEEAVDPILGDNFNKIEASRLLQIGLLCVQAAFDQRPAMSVVVKMMKG 593          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 85/216 (39.35%), Postives = 127/216 (58.80%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G C    E LLVY +++N S+A  L   +     LDW TR ++ +G A+GL YLHE    KI+HRD+KA NVLLD    A + DFGLAKL D   T+++T++ GT+G++APEY   G  +++ DV+ +G++ LE+V+G+   ++                    +  L  +VD +L  +++ +E   M+ +ALLCT  SP  RP MS VV MLEG+
Sbjct:  730 GCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNY--RPKEEFVYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLEGK 943          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 84/213 (39.44%), Postives = 131/213 (61.50%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            G+  +PT  LL Y +M+N S+ + L      +  LDW TR ++A+GAA+GL YLH  C P+IIHRD+K++N+LLDE+FEA + DFG+AK +   KT+ +T V GT+G+I PEY  T + +E++D++ +GI+LLEL+TG++A+D                        ++A+         ++  +    Q+ALLCT+ +P +RP M EV R+L
Sbjct:  709 GYALSPTGNLLFYDYMENGSL-WDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIPASKTHASTYVLGTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKKAVDNEANLHQLILSKADDNTV------MEAVDPEVTVTCMDLGHIRKTFQLALLCTKRNPLERPTMLEVSRVL 914          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 77/217 (35.48%), Postives = 127/217 (58.53%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            +G+C     R+LVY ++ + ++   L         L W  R ++  G A+ L YLHE   PK++HRD+KA+N+L+D++F A + DFGLAKL+D  ++++TT+V GT G++APEY +TG  +E++D++ +G++LLE +TG+  +D+ R                 R  R + +VD  L    +   ++  + V+L C     E RP MS+V RMLE +
Sbjct:  243 LGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTR--RAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESD 457          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 83/215 (38.60%), Postives = 130/215 (60.47%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKL-VDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            IGFC    +RLLVY +M   S+   L  +  G+  LDW TR ++A GAARGLEYLH+   P +I+RD+K +N+LL ED++  + DFGLAK+     KT+V+T+V GT G+ AP+Y  TG+ + ++D++ +G++LLEL+TG++AID ++                 R +    +VD  L   Y ++ +   + ++ +C Q  P  RP +S+VV  L
Sbjct:  164 IGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDR-RNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLAL 377          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
PSKR2_ARATH1.526e-4142.06Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
FEI2_ARATH9.889e-4138.89LRR receptor-like serine/threonine-protein kinase ... [more]
PSKR1_ARATH8.371e-4037.85Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y1765_ARATH1.428e-3940.09Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH2.436e-3939.53Probable LRR receptor-like serine/threonine-protei... [more]
CRK3_ARATH4.155e-3938.89Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
Y5343_ARATH7.087e-3939.35Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH7.087e-3939.44LRR receptor-like serine/threonine-protein kinase ... [more]
Y2296_ARATH1.209e-3835.48Probable receptor-like protein kinase At2g42960 OS... [more]
RLCK7_ARATH1.209e-3838.60Probable serine/threonine-protein kinase RLCKVII O... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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