CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: TESK1_RAT (Dual specificity testis-specific protein kinase 1 OS=Rattus norvegicus GN=Tesk1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 2
Query:   80 LREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLL---DEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGH---IAPEYLSTGKSSERTDVFGYGIMLLELV 415
            L ++      L W  R  +AL  A+GL YLH      + HRD+ + N L+   D  F AVVGDFGLA+ + V +     +    +G    +APE L      E+ DVF +GI+L EL+
Sbjct:  132 LEQLLSSPEPLSWPVRLHLALDIAQGLRYLHAK---GVFHRDLTSKNCLVRREDGGFTAVVGDFGLAEKIPVYREGARKEPLAVVGSPYWMAPEVLRGELYDEKADVFAFGIVLCELI 246          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RIPK2_MOUSE (Receptor-interacting serine/threonine-protein kinase 2 OS=Mus musculus GN=Ripk2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 42/151 (27.81%), Postives = 78/151 (51.66%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAK----LVDVRKTNVTTQVRGTMGHIAPEYLSTG---KSSERTDVFGYGIMLLELVTGQRAID 436
            +G C  P    +V  +M N S+   L   K   P + W  R R+    A G+ YLH + NP ++H D+K  N+LLD +F   + DFGL+K     +   ++  +    GT+ ++ PE    G   ++S + D++ Y +++ E+++ ++  +
Sbjct:   82 LGICNEPEFLGIVTEYMPNGSLNELLHR-KTEYPDIAWPLRFRILHEIALGVNYLH-NMNPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSYKSAPEGGTIIYMPPENYEPGQKSRASVKHDIYSYAVIMWEVLSRKQPFE 230          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: WNK5_ORYSJ (Probable serine/threonine-protein kinase WNK5 OS=Oryza sativa subsp. japonica GN=WNK5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   41 VYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAV-VGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVT 418
            V  F+  +  +  LRE +     +     K+ A     GL++LH H +P IIHRD+  +NV ++ +   V +GD GLA +VD  KT+V   + GT   +APE L T   +E  D++ YG+ +LE+VT
Sbjct:  131 VLNFITEVCTSGSLREYRDRHRHVSVKALKKWARQILLGLDHLHTH-DPCIIHRDLNCSNVFINGNTGQVKIGDLGLAAIVD--KTHVAHTILGTPEFMAPE-LYTETYTESVDIYSYGMCVLEMVT 253          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: ROCO7_DICDI (Probable serine/threonine-protein kinase roco7 OS=Dictyostelium discoideum GN=roco7 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  116 WVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLD----EDFEAVVGDFGLAKLVDVRKTNVTTQVRG----TMGHIAPEYLSTGKSSERTDVFGYGIMLLELVT 418
            W T  ++A+  A+G+ +LH  C P I+HRD+K+AN+LL     ++  A VGDFGL+         +  +V+G        +APE +  G+ +E+ D++ Y I+L E++T
Sbjct: 1871 WGTVLKLAIDVAKGMNFLHS-CKPMIVHRDLKSANILLGGSSMDNLVAKVGDFGLSI------KPIGKEVKGRKVWNWRWLAPECMGDGQYTEKIDIYSYAIVLWEIIT 1972          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: IRAK2_RAT (Interleukin-1 receptor-associated kinase-like 2 OS=Rattus norvegicus GN=Irak2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQ----VRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSR 445
            +GFCT      L+YP+M N S+  RL   +    +L W  R  +  G    +E+LH   +  IIH +VK+ANVLLD+     +           +KT  T       + +  ++   ++  G+ +++ D+F  GI+L E++TG  A+D  R
Sbjct:  273 LGFCTGRQFHSLIYPYMANGSLQDRLWA-QGDSDMLSWPQRASICSGLLLAVEHLH---SLDIIHSNVKSANVLLDQHLNPKLAHPVAHPCPTNKKTKYTVMKTHLFQASAAYLPENFIRVGQLTKQVDIFSCGIVLAEVLTGIPAMDKDR 419          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: AVR2B_CHICK (Activin receptor type-2B OS=Gallus gallus GN=ACVR2B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  107 VLDWVTRKRVALGAARGLEYLHEHC--------NPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVR-GTMGHIAPEYLSTGKSSE-----RTDVFGYGIMLLELVTGQRAID 436
            ++ W     VA   ARGL YLHE           P I HRD K+ NVLL  D  AV+ DFGLA   +  K    T  + GT  ++APE L    + +     R D++  G++L ELV+  RA+D
Sbjct:  281 IISWNELCHVAETMARGLSYLHEDVPWCKGEGHKPAIAHRDFKSKNVLLKNDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCRAVD 404          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
TESK1_RAT4.787e-1136.44Dual specificity testis-specific protein kinase 1 ... [more]
RIPK2_MOUSE4.787e-1127.81Receptor-interacting serine/threonine-protein kina... [more]
WNK5_ORYSJ8.165e-1136.22Probable serine/threonine-protein kinase WNK5 OS=O... [more]
ROCO7_DICDI8.165e-1134.86Probable serine/threonine-protein kinase roco7 OS=... [more]
IRAK2_RAT8.165e-1129.80Interleukin-1 receptor-associated kinase-like 2 OS... [more]
AVR2B_CHICK8.165e-1137.90Activin receptor type-2B OS=Gallus gallus GN=ACVR2... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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