CX297861

Overview
NameCX297861
Unique NameCX297861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 95/213 (44.60%), Postives = 144/213 (67.61%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETG-ETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD++GH +   G+ L++RY+I+  +GEG FG+V++C+D + G   VA+K+V+++ +Y EAA +EI VLE L   D + + RCVQ+  WF++  HICIVFE+LG S YDF+++N + PF +D +R++  Q+ + V F+H  +L HTDLKPENILFV  +Y +  + K+     T +N          IKV+DFGS  Y+ + H+ +VSTRHYRA
Sbjct:  143 DDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLIN--------PDIKVVDFGSATYDDEHHSTLVSTRHYRA 347          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 90/212 (42.45%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYR 681
            DDK+GH +  +G+ L  RY+I+  +GEGTFG+V++CLD   G++ VA+K++R++ KYREAA  EI+VL+ +K  D+     CV + +WF++  H+CI FE+LG + ++FL++NN++P+P+  VR +  QL   + F+H+ +L HTDLKPENILFV+ E+  + +   +          ++  K+++I+V DFGS  ++H+ H  IV+TRHYR
Sbjct:  138 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE--------EKSVKNTSIRVADFGSATFDHEHHTTIVATRHYR 341          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 90/212 (42.45%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYR 681
            DDK+GH +  +G+ L  RY+I+  +GEGTFG+V++CLD   G++ VA+K++R++ KYREAA  EI+VL+ +K  D+     CV + +WF++  H+CI FE+LG + ++FL++NN++P+P+  VR +  QL   + F+H+ +L HTDLKPENILFV+ E+  + +   +          ++  K+++I+V DFGS  ++H+ H  IV+TRHYR
Sbjct:  286 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE--------EKSVKNTSIRVADFGSATFDHEHHTTIVATRHYR 489          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 90/212 (42.45%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYR 681
            DDK+GH +  +G+ L  RY+I+  +GEGTFG+V++CLD   G++ VA+K++R++ KYREAA  EI+VL+ +K  D+     CV + +WF++  H+CI FE+LG + ++FL++NN++P+P+  VR +  QL   + F+H+ +L HTDLKPENILFV+ E+  + +   +          ++  K+++I+V DFGS  ++H+ H  IV+TRHYR
Sbjct:  286 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE--------EKSVKNTSIRVADFGSATFDHEHHTTIVATRHYR 489          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 90/212 (42.45%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYR 681
            DDK+GH +  +G+ L  RY+I+  +GEGTFG+V++CLD   G++ VA+K++R++ KYREAA  EI+VL+ +K  D+     CV + +WF++  H+CI FE+LG + ++FL++NN++P+P+  VR +  QL   + F+H+ +L HTDLKPENILFV+ E+  + +   +          ++  K+++I+V DFGS  ++H+ H  IV+TRHYR
Sbjct:  138 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE--------EKSVKNTSIRVADFGSATFDHEHHTTIVATRHYR 341          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42
Identity = 93/221 (42.08%), Postives = 133/221 (60.18%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSG----SRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYL----KIP---DYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYR 681
            DD++ +Y   +GE L +RYK+L  +G GTF  V++C D  +   VAIK+VRS KKY E A+ EID+L  L++   S     S C+++ + F +++HIC+VF+  G SLY+FL+KN YRP P+  ++ I +QLL  +  MH L L+HTDLKPENIL  S  +      IP      +   S   V++Y  L  +  I VIDFG   +E+  H  IV +R YR
Sbjct:  572 DDENDYYKVQVGEYLNNRYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHICLVFKRYGLSLYEFLKKNRYRPLPLSQIQNISKQLLTAIYSMHKLSLVHTDLKPENILLESSRFTYFDNSIPLQFKNSIDTTSNNSVDHYCHLVDTD-IVVIDFGGATFENTHHTAIVCSRPYR 791          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.980e-42
Identity = 91/219 (41.55%), Postives = 137/219 (62.56%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTS--RYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYL--KIPDYKVTARSPTDVNYYK---RLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DKDGHY++   +   S  R+ +   +G+GTFG+VL C+D +     VA+KV+R++ +YREAA TE+ +L+ +   D  G  +C+ +R  FDY+NHIC+V ++ G S+YDF+  N    FP   ++ I RQL+  V F+HDL +IHTDLKPENIL     ++  K+P   V + S       K   ++ K+  IK+IDFGS  + ++ H  ++STRHYRA
Sbjct:  294 DKDGHYVYQENDIFGSGGRFVVKDLLGQGTFGKVLKCIDNKYEPNYVAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHICLVTDLYGRSIYDFMCSNGIARFPGSHIQAIARQLIRSVCFLHDLGIIHTDLKPENILICDETHIAQKLPLKTVQSLSKRRREASKGKRKILKNPEIKIIDFGSAIFHYEYHPPVISTRHYRA 512          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 77/212 (36.32%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD+ G YL  L +++  RY++L  IG+G+FGQV  CLD +  E VA+K++R+ K++ + A+ E+ +LE L++ D+  +   V ++++F +RNH CI FE+LG +LY+ ++ NN++ F + +VR     +L+C+  +   ++IH DLKPENI                      V Y K     +++KVIDFGS+ YEHQ+    + +R YR+
Sbjct:   86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHQQALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFCITFELLGINLYELMKNNNFQGFSLSIVRRFTLSVLKCLQMLSVEKIIHCDLKPENI----------------------VLYQK---GQASVKVIDFGSSCYEHQKVYTYIQSRFYRS 272          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.262e-36
Identity = 75/212 (35.38%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   52 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            DD+ G Y+  L +++  RY++L  IG+G+FGQV  CLD +  E VA+K++R+ K++   A+ E+ +LE L+R D+  +   V ++++F +RNH+CI FE+LG +LY+ ++ N++  F + +VR     +L+C+  ++  ++IH DLKPENI+                        Y+R      +KVIDFGS+ YEHQ+    + +R YR+
Sbjct:  201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLCITFELLGINLYELMKNNSFHGFNLSIVRRFTFSILKCLHMLYVEKIIHCDLKPENIVL-----------------------YQR--GQVTVKVIDFGSSCYEHQKVYTYIQSRFYRS 387          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: POM1_SCHPO (Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe GN=pom1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.155e-35
Identity = 72/221 (32.58%), Postives = 129/221 (58.37%), Query Frame = 1
Query:   25 QNGTPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRC-VQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYIVSTRHYRA 684
            +N +  +  DD+ G Y   LG+++  RY+++  +G+G+FGQVL C+D ETG+ VA+K++R+ K++   A+ E  +L+ ++ +D     C VQ  + F +R+H+C+  E+LG +LY+ ++ N ++  P+ +++ I RQL++C+  +++  +IH DLKPENIL   P                           S +KVIDFGS+ +E +     + +R YR+
Sbjct:  672 ENTSSNFGFDDERGDYKVVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREWDPLDEYCMVQYTDHFYFRDHLCVATELLGKNLYELIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDLKPENILLCHPF-------------------------KSQVKVIDFGSSCFEGECVYTYIQSRFYRS 867          
The following BLAST results are available for this feature:
BLAST of CX297861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
CLK1_HUMAN7.489e-4944.60Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
CLK3_RAT2.179e-4842.45Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE2.179e-4842.45Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN2.179e-4842.45Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN2.179e-4842.45Dual specificity protein kinase CLK3 OS=Bos taurus... [more]
CLKA_DICDI2.333e-4242.08Probable serine/threonine-protein kinase clkA OS=D... [more]
KNS1_YEAST3.980e-4241.55Dual specificity protein kinase KNS1 OS=Saccharomy... [more]
DYRK4_HUMAN1.122e-3636.32Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK4_MOUSE4.262e-3635.38Dual specificity tyrosine-phosphorylation-regulate... [more]
POM1_SCHPO6.155e-3532.58Dual specificity protein kinase pom1 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionC06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297861 ID=CX297861; Name=CX297861; organism=Citrus clementina; type=EST; length=684bp
GAGGTGTTTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAA
TGATGACAAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTT
CTCGCTATAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTT
TTGGATTGTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGT
GCGAAGTATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGC
TTGAGTTGCTCAAAAGATATGACAGAAGTGGCAGTCGTTGTGTTCAAATA
AGGAACTGGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCT
TGGACCTAGCCTATACGATTTTCTTCGGAAAAATAATTATCGCCCATTTC
CGGTTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCA
TTCATGCATGATTTGCGCCTCATCCATACCGACTTGAAGCCTGAGAATAT
ACTTTTTGTTTCTCCGGAATACTTGAAAATACCTGACTACAAGGTTACGG
CCCGATCACCAACTGATGTGAACTATTACAAGAGGTTGCCAAAGTCAAGT
GCTATTAAGGTTATTGATTTTGGAAGCACAGCATATGAGCATCAAGAACA
CAACTATATTGTCTCCACCAGGCACTACCGTGCT
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