CX297861

Overview
NameCX297861
Unique NameCX297861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: MYLK2_BOVIN (Myosin light chain kinase 2, skeletal/cardiac muscle OS=Bos taurus GN=MYLK2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 1
Query:   91 NLTSRYKILRK--IGEGTFGQVLDCLDRETGETVAIKVVRS-IKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEML-GPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSP--EYLKIPDYKVTAR 555
            N+ S++ +  K  +G G FG V  C ++ TG  +A KV++    K +E  + EI+V+  L   +      +Q+    +  + I +  E + G  L++ +   +Y+   VD +  + RQ+ + + FMH +R++H DLKPENIL V+     +KI D+ +  R
Sbjct:  305 NINSQFSLNSKEALGGGKFGAVCTCTEKATGLKLAAKVIKKQTPKDKEMVLLEIEVMNQLNHRN-----LIQLYAAIETPHEIVLFMEYIEGGELFERIVDEDYQLTEVDTMVFV-RQICDGILFMHKMRVLHLDLKPENILCVNTTGHLVKIIDFGLARR 459          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: MPK15_ORYSJ (Mitogen-activated protein kinase 15 OS=Oryza sativa subsp. japonica GN=MPK15 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAA---MTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGR----QLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RYKI   IG+G++G V   LD  TGE VAIK +  I ++   A   + EI +L LL+  D    + + +         I +VFE++   L+  ++ N+      DL  E  +    QLL  + ++H   + H DLKP+NIL  +   LKI D+
Sbjct:   11 NRYKIEEVIGKGSYGVVCSALDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKAND------DLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDF 158          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDKL3_RAT (Cyclin-dependent kinase-like 3 OS=Rattus norvegicus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVV--RSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKV--TARSPTDV 570
            Y+ L K+GEG++G V+ C  ++TG  VAIK+   +  K   + A  EI  L+  +         V +   F  +  I +VFE +  ++ D L ++         +R+   Q+L  + ++H+  +IH D+KPENIL       K+ D+    T  +P DV
Sbjct:    4 YETLGKVGEGSYGTVMKCKHKDTGRIVAIKIFYEKPEKSVNKIATREIKFLKQFRH-----ENLVNLIEVFRQKKKIHLVFEFIDHTVLDEL-QHYCHGLESKRLRKYLFQILRAIEYLHNNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDV 156          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDKL3_MOUSE (Cyclin-dependent kinase-like 3 OS=Mus musculus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVV--RSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKV--TARSPTDV 570
            Y+ L K+GEG++G V+ C  ++TG  VAIK+   +  K   + A  EI  L+  +         V +   F  +  I +VFE +  ++ D L ++         +R+   Q+L  + ++H+  +IH D+KPENIL       K+ D+    T  +P DV
Sbjct:    4 YETLGKVGEGSYGTVMKCKHKDTGRIVAIKIFYEKPEKSVNKIATREIKFLKQFRH-----ENLVNLIEVFRQKKKIHLVFEFIDHTVLDEL-QHYCHGLESKRLRKYLFQILRAIEYLHNNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDV 156          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDK5_XENLA (Cell division protein kinase 5 OS=Xenopus laevis GN=cdk5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  103 RYKILRKIGEGTFGQVLDCLDRETGETVAIKVVR---SIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +Y+ L KIGEGT+G V    +R+T E VA+K VR     +    +A+ EI +L+ LK         V++ +       + +VFE     L  +    N    P ++V+    QLL+ +AF H   ++H DLKP+N+L      LK+ D+
Sbjct:    3 KYEKLEKIGEGTYGTVFKAKNRDTHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-----KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDP-EIVKSFMYQLLKGLAFCHSRNVLHRDLKPQNLLINRNGELKLADF 145          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVD------LVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            ++ + KIGEGT+G V    +R TG+ VA+K +R          T I  + LLK        C++  +     N I ++FE L   L  ++        PVD      LVR    Q+   + F H  R++H DLKP+N+L      +K+ D+
Sbjct:    4 FEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIREISLLKELKHENIVCLE--DVLMEENRIYLIFEFLSMDLKKYMDS-----LPVDKHMESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADF 147          
The following BLAST results are available for this feature:
BLAST of CX297861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
MYLK2_BOVIN8.094e-1129.81Myosin light chain kinase 2, skeletal/cardiac musc... [more]
MPK15_ORYSJ8.094e-1133.12Mitogen-activated protein kinase 15 OS=Oryza sativ... [more]
CDKL3_RAT8.094e-1129.56Cyclin-dependent kinase-like 3 OS=Rattus norvegicu... [more]
CDKL3_MOUSE8.094e-1129.56Cyclin-dependent kinase-like 3 OS=Mus musculus GN=... [more]
CDK5_XENLA8.094e-1132.21Cell division protein kinase 5 OS=Xenopus laevis G... [more]
CDC2_DROME8.094e-1130.46Cell division control protein 2 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionC06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297861 ID=CX297861; Name=CX297861; organism=Citrus clementina; type=EST; length=684bp
GAGGTGTTTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAA
TGATGACAAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTT
CTCGCTATAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTT
TTGGATTGTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGT
GCGAAGTATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGC
TTGAGTTGCTCAAAAGATATGACAGAAGTGGCAGTCGTTGTGTTCAAATA
AGGAACTGGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCT
TGGACCTAGCCTATACGATTTTCTTCGGAAAAATAATTATCGCCCATTTC
CGGTTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCA
TTCATGCATGATTTGCGCCTCATCCATACCGACTTGAAGCCTGAGAATAT
ACTTTTTGTTTCTCCGGAATACTTGAAAATACCTGACTACAAGGTTACGG
CCCGATCACCAACTGATGTGAACTATTACAAGAGGTTGCCAAAGTCAAGT
GCTATTAAGGTTATTGATTTTGGAAGCACAGCATATGAGCATCAAGAACA
CAACTATATTGTCTCCACCAGGCACTACCGTGCT
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