CX297863

Overview
NameCX297863
Unique NameCX297863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.793e-31
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            E+GNP I NRI ECRSYPLYRLVREELGT  LTGEKV SPGE+ DKVFTA+C G+IIDP+LECL+ WNGAPLPIC
Sbjct:  630 ESGNPLIRNRITECRSYPLYRLVREELGTELLTGEKVRSPGEEIDKVFTAICNGQIIDPLLECLKSWNGAPLPIC 704          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.793e-31
Identity = 58/76 (76.32%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP IPNRI+ECRSYPLY+ VR+ELGT +LTGEKVTSPGE+F+KVF AM +G+IIDP+LECL  WNGAPLPIC
Sbjct:  641 LESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 716          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.954e-31
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            E+GNPTIPN+I  CRSYPLY+ VREELGT  LTGE V SPGE+ DK+F+AMCQGKIIDP+LECL EWNGAPLPIC
Sbjct:  651 ESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPIC 725          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP IPNRI+ECRSYPLY+ VR+ELG  +LTGEKVTSPGE+FDKVF AM +G+IIDP+LECL  WNGAPLPIC
Sbjct:  641 LESGNPAIPNRIEECRSYPLYKFVRKELGIEYLTGEKVTSPGEEFDKVFIAMSKGEIIDPLLECLESWNGAPLPIC 716          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 3
Query:   18 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +VENG P I NRI+ECRSYPLY+ VREELGT  LTGEKV SPGE+ DKVFTAMC+GK++DP+L CL  WNGAPLPIC
Sbjct:  634 SVENGIPAISNRIEECRSYPLYKFVREELGTELLTGEKVRSPGEELDKVFTAMCEGKLVDPLLACLEAWNGAPLPIC 710          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:    6 GRGQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            G     E+G   IPN+I+ECRSYPLY+ VREELGT  LTGEKV SPGE+FDK+FTAMCQGKIIDP++ECL EWNGAPLPI
Sbjct:  633 GARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPI 712          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            EN    IPN+IK+CRSYPLY+ VREELGT+ LTGEKV SPGE+ DKVF+AMCQGKIIDP+LECL EWNGAPLPIC
Sbjct:  638 ENDQCAIPNKIKDCRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGAPLPIC 712          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            ENGN TI N+IKECRSYPLY+ VREELGT+ LTGEKV SPGE+ DK+FTA+CQGKIIDP+LECL +WNGAPLPI
Sbjct:  650 ENGNTTISNKIKECRSYPLYKFVREELGTSLLTGEKVISPGEECDKLFTAICQGKIIDPLLECLGDWNGAPLPI 723          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.211e-30
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP I NRIKECRSYPLYR VR ELG   LTGEKV SPGE+ DKVFTAMC G+IID +LECL+EWNGAPLPIC
Sbjct:  637 LESGNPAIANRIKECRSYPLYRFVRGELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGAPLPIC 712          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ENGN TI N+I  CRSYPLY+ VREELGT+ LTGE+V SPGE+ DK+FTAMCQGKIIDP+L+CL EWNGAPLPIC
Sbjct:  651 ENGNSTIANKINGCRSYPLYKFVREELGTSLLTGERVISPGEECDKLFTAMCQGKIIDPLLKCLGEWNGAPLPIC 725          
The following BLAST results are available for this feature:
BLAST of CX297863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL1_SOLLC3.793e-3180.00Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_PETCR3.793e-3176.32Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PALY_MEDSA4.954e-3178.67Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL2_PETCR6.471e-3176.32Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PAL1_LITER1.104e-3075.32Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL1_SOYBN1.442e-3073.75Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL2_PHAVU1.883e-3078.67Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_PEA1.883e-3079.73Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL2_TOBAC3.211e-3077.63Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_TRISU4.194e-3077.33Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]

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Properties
Property NameValue
Genbank descriptionC06006A08SK RindPdig24 Citrus clementina cDNA clone C06006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297863 ID=CX297863; Name=CX297863; organism=Citrus clementina; type=EST; length=419bp
GATTCGGCCGAGGGCAGACTGTTGAGAATGGAAATCCAACAATTCCCAAC
AGGATCAAAGAATGCAGGTCTTACCCATTGTACAGGTTAGTGAGGGAGGA
GCTCGGGACTAATTTTCTGACTGGGGAAAAAGTTACATCGCCCGGCGAGA
AATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCCA
ATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATATGCTA
GTTGTTTTATTCTTAAGAATTCATTGAATTGCCGATGTGACTAAATGGTA
CAAATTAGTCCACCTGTAATGTTTCAATTCCTTGTATTTGTTGTTGAATA
TCAAGAAATCCGACTGGGTATCTCATTTTTTTTCCTCNNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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