CX297863

Overview
NameCX297863
Unique NameCX297863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENG   IP+RI ECRSYPLYR VREELGT +LTGEK  SPGE+ +KV  A+ +GK IDP+LECL+EWNG PLPIC
Sbjct:  638 VENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC 713          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            E G   I NRIKECRSYPLYR VR+EL T  LTGE V SPGE+FDKVF A+  GK+IDP+LECL+EWNGAP+ IC
Sbjct:  633 EEGTSAIANRIKECRSYPLYRFVRDELNTELLTGENVRSPGEEFDKVFLAISDGKLIDPLLECLKEWNGAPVSIC 707          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENG     NRI ECRSYPLYR VR+ELGT +LTGEK  SPGE+ DKVF AM QGK ID +LECL+EWNG PLP+C
Sbjct:  625 VENGTAAQQNRIAECRSYPLYRFVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNGEPLPLC 700          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ENG   + NRIK+CRSYPLYR VR EL T  LTGE V SPGE FDKVF A+ QGK+IDP+ ECL+EWNGAP+ IC
Sbjct:  620 ENGTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGAPISIC 694          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.307e-23
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            V NG   + NRI E RS+PLYR VREELG  FLTGEK+ SPGE+ +KVF  + QGK+IDPML+CL+EWNG PLPI
Sbjct:  626 VANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNGEPLPI 700          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 3
Query:   15 QTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNG 230
            ++ + G   +P+RI+ECRSYPLY  VR +LGT  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  642 ESYDKGTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
The following BLAST results are available for this feature:
BLAST of CX297863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL2_ORYSI3.323e-2771.05Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL4_ARATH1.263e-2670.67Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PALY_WHEAT2.154e-2671.05Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL3_ARATH8.185e-2669.33Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL1_ORYSJ1.307e-2366.67Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA2.470e-1444.44Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]

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Properties
Property NameValue
Genbank descriptionC06006A08SK RindPdig24 Citrus clementina cDNA clone C06006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297863 ID=CX297863; Name=CX297863; organism=Citrus clementina; type=EST; length=419bp
GATTCGGCCGAGGGCAGACTGTTGAGAATGGAAATCCAACAATTCCCAAC
AGGATCAAAGAATGCAGGTCTTACCCATTGTACAGGTTAGTGAGGGAGGA
GCTCGGGACTAATTTTCTGACTGGGGAAAAAGTTACATCGCCCGGCGAGA
AATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCCA
ATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATATGCTA
GTTGTTTTATTCTTAAGAATTCATTGAATTGCCGATGTGACTAAATGGTA
CAAATTAGTCCACCTGTAATGTTTCAATTCCTTGTATTTGTTGTTGAATA
TCAAGAAATCCGACTGGGTATCTCATTTTTTTTCCTCNNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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