CX297866

Overview
NameCX297866
Unique NameCX297866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.539e-39
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDRDRV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I N+
Sbjct:   95 NDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
The following BLAST results are available for this feature:
BLAST of CX297866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ARF1_SOLTU2.539e-3991.86ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF3_TAKRU1.179e-3684.88ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.179e-3684.88ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.179e-3684.88ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.179e-3684.88ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.179e-3684.88ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.179e-3684.88ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_RAT1.179e-3684.88ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.179e-3684.88ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.179e-3684.88ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC06006A11SK RindPdig24 Citrus clementina cDNA clone C06006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297866 ID=CX297866; Name=CX297866; organism=Citrus clementina; type=EST; length=540bp
GAGGGTTGATACAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAACT
GCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTT
TTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCAGAGATCACT
GATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGTACATCCAGAG
CACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCT
CCAACAACATCGCTAACAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACT
CTTTGCGGCAGCATCTATGTGAATGATGTTACTATGCTTTTGTTTATTTT
GTCGGGGATTCTTTTTGGGCTTTACTACCTACGTTCAGTAGAATGTATTT
GTTTGTGTTAGATATTTGATTGGCACCATACTATAAAGTTTTCTGCATTG
TCATTGTAGAGTTTAAATTACCCTCATTATTCAGAATTCAATGATTTTTT
GGCTGTTATTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
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