CX297866

Overview
NameCX297866
Unique NameCX297866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   95 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.627e-36
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 273
            NDRDRVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGL SLRQR WYIQ+TCAT+G+GL+EGLDWLS  +  K+
Sbjct:   98 NDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.431e-36
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 273
            NDR+RV EAR+EL RMLNEDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  + N++
Sbjct:   95 NDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.431e-36
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+R+ EA +EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGL+WLS N+ N+
Sbjct:   95 NDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.431e-36
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 267
            NDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:   95 NDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179          
The following BLAST results are available for this feature:
BLAST of CX297866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ARF1_XENLA1.540e-3684.88ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.540e-3684.88ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.540e-3684.88ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.540e-3684.88ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.540e-3684.88ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.540e-3684.88ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_NEUCR2.627e-3682.76ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF_DUGJA3.431e-3682.76ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_SCHPO3.431e-3681.40ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_LOCMI3.431e-3683.53ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]

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Properties
Property NameValue
Genbank descriptionC06006A11SK RindPdig24 Citrus clementina cDNA clone C06006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297866 ID=CX297866; Name=CX297866; organism=Citrus clementina; type=EST; length=540bp
GAGGGTTGATACAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAACT
GCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTT
TTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCAGAGATCACT
GATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGTACATCCAGAG
CACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCT
CCAACAACATCGCTAACAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACT
CTTTGCGGCAGCATCTATGTGAATGATGTTACTATGCTTTTGTTTATTTT
GTCGGGGATTCTTTTTGGGCTTTACTACCTACGTTCAGTAGAATGTATTT
GTTTGTGTTAGATATTTGATTGGCACCATACTATAAAGTTTTCTGCATTG
TCATTGTAGAGTTTAAATTACCCTCATTATTCAGAATTCAATGATTTTTT
GGCTGTTATTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
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