CX297866

Overview
NameCX297866
Unique NameCX297866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.396e-29
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+RV E+ +EL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:   95 NDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   95 NDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            NDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   95 NDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.445e-26
Identity = 51/81 (62.96%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CAT+G+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GLYEGL WL++N
Sbjct:   92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 7.171e-26
Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   25 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            R+ +A++ELH +L EDELRDA LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I +K
Sbjct:  101 RIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
The following BLAST results are available for this feature:
BLAST of CX297866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ARF5_CHICK1.396e-2967.44ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_RAT2.633e-2867.44ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.633e-2867.44ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF6_RAT6.486e-2764.20ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG6.486e-2764.20ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE6.486e-2764.20ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN6.486e-2764.20ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK1.445e-2662.96ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF6_XENLA2.465e-2662.96ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF_GIALA7.171e-2663.41ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06006A11SK RindPdig24 Citrus clementina cDNA clone C06006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297866 ID=CX297866; Name=CX297866; organism=Citrus clementina; type=EST; length=540bp
GAGGGTTGATACAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAACT
GCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTT
TTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCAGAGATCACT
GATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGTACATCCAGAG
CACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCT
CCAACAACATCGCTAACAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACT
CTTTGCGGCAGCATCTATGTGAATGATGTTACTATGCTTTTGTTTATTTT
GTCGGGGATTCTTTTTGGGCTTTACTACCTACGTTCAGTAGAATGTATTT
GTTTGTGTTAGATATTTGATTGGCACCATACTATAAAGTTTTCTGCATTG
TCATTGTAGAGTTTAAATTACCCTCATTATTCAGAATTCAATGATTTTTT
GGCTGTTATTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
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