CX297866

Overview
NameCX297866
Unique NameCX297866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.597e-25
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL EGL WL++N
Sbjct:   92 DRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            +D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I NK
Sbjct:   95 SDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            +D DR+  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   95 SDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            +D DR+  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   95 SDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 258
            D +R+ EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL WLS N
Sbjct:  100 DSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 41/85 (48.24%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:  104 DRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   19 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  464 RDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   19 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  484 RDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   19 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  484 RDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 270
            DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:  104 DRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
The following BLAST results are available for this feature:
BLAST of CX297866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ARF3_DROME1.597e-2562.96ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH1.953e-2360.47Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_ARATH2.820e-2255.42ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.204e-2254.22ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF2_SCHPO9.071e-2156.79Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARFJ_DICDI1.310e-1948.24ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARD1_RAT3.811e-1958.54GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARD1_MOUSE3.811e-1958.54GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN3.811e-1958.54GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFK_DICDI6.501e-1947.06ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06006A11SK RindPdig24 Citrus clementina cDNA clone C06006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297866 ID=CX297866; Name=CX297866; organism=Citrus clementina; type=EST; length=540bp
GAGGGTTGATACAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAACT
GCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTT
TTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCAGAGATCACT
GATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGTACATCCAGAG
CACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCT
CCAACAACATCGCTAACAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACT
CTTTGCGGCAGCATCTATGTGAATGATGTTACTATGCTTTTGTTTATTTT
GTCGGGGATTCTTTTTGGGCTTTACTACCTACGTTCAGTAGAATGTATTT
GTTTGTGTTAGATATTTGATTGGCACCATACTATAAAGTTTTCTGCATTG
TCATTGTAGAGTTTAAATTACCCTCATTATTCAGAATTCAATGATTTTTT
GGCTGTTATTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top