CX297866

Overview
NameCX297866
Unique NameCX297866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 249
            D+DR+  A  ELH ML E+EL+DA LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:   97 DKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            +DR R+ EA  EL +++ E+EL+   LL+FA KQD  + M   E+TD+LGLH ++ R WY+Q T    G G+YEGLDWLS  I
Sbjct:   95 SDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWLSTKI 177          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA-TSGEGLYEGLDWLSNNIANK 270
            DR+R+ E ++E+  +L ++EL+   +L+FANKQD+ NAMN +EI D L L+S++ R WY+Q   A  S  G+YEG DW++N++ NK
Sbjct:  104 DRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL +GL+W+++ I
Sbjct:   95 DRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL +GL+W+++ I
Sbjct:   95 DRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            +D +R+ EA++EL  +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL+ R W+I  T A SG+GLYEGL W+   +
Sbjct:   95 SDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQM 177          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   13 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            +D  R+   +++LH ML  ++L  A +LV ANKQDLP AMN AE++ +LGL +LR  R W I   CA  GEGL E L+W++NN+
Sbjct:   95 SDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGLPEALEWIANNL 178          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct:   95 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct:   95 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CX297866 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   16 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 261
            DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct:   95 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
The following BLAST results are available for this feature:
BLAST of CX297866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ARL1_YEAST5.503e-1855.13ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARFD_DICDI5.503e-1849.40ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARFH_DICDI7.187e-1846.51ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL5B_MOUSE9.387e-1848.78ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN9.387e-1848.78ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARF11_CAEEL9.387e-1853.01ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL5_CAEEL1.038e-1648.81ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARL5A_RAT1.355e-1646.34ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_MOUSE1.355e-1646.34ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_HUMAN1.355e-1646.34ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC06006A11SK RindPdig24 Citrus clementina cDNA clone C06006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297866 ID=CX297866; Name=CX297866; organism=Citrus clementina; type=EST; length=540bp
GAGGGTTGATACAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAACT
GCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTT
TTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCAGAGATCACT
GATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGTACATCCAGAG
CACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCT
CCAACAACATCGCTAACAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACT
CTTTGCGGCAGCATCTATGTGAATGATGTTACTATGCTTTTGTTTATTTT
GTCGGGGATTCTTTTTGGGCTTTACTACCTACGTTCAGTAGAATGTATTT
GTTTGTGTTAGATATTTGATTGGCACCATACTATAAAGTTTTCTGCATTG
TCATTGTAGAGTTTAAATTACCCTCATTATTCAGAATTCAATGATTTTTT
GGCTGTTATTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
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