CX297882

Overview
NameCX297882
Unique NameCX297882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 71/207 (34.30%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 KRRKIMAANGEKH-----KISCAIDHIIDAQM----KGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPV-TESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILAL 707
            +R ++  A  E+H     K S A  H +DA +    + +++E+ +I ++ ++  A ++TT  + EWA+AE++ +P VQQK++ E   V+  + + TE++   LPYLQ  VKE  RLH P PL++PH +  + K+GG+ IPK S + VN W +A +P                   ++         DFR LPFG GRR CPG  L +
Sbjct:  245 RRDRLTRAIMEEHTLARQKSSGAKQHFVDALLTLKDQYDLSEDTIIGLLWDMITAGMDTTAITAEWAMAEMIKNPRVQQKVQEEFDRVVGLDRILTEADFSRLPYLQCVVKESFRLHPPTPLMLPHRSNADVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPFEFRPERFLEEDVDMKG------HDFRLLPFGAGRRVCPGAQLGI 445          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 70/238 (29.41%), Postives = 117/238 (49.16%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGE-----ITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNP-VTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIIL 701
            N  D  P L+ F    L K  +    +       F+E+R +      +   I   +D +ID +  G+     ++E+ +  I+  + +A  ETT  S+EWA+ EL+ HP+   K++ EI  V+  N    E ++  LPY+QA +KE LRLH P+PLL+P   +++ K  G+ IPK ++++VNAW +  +P                   ++         ++  +PFG GRR C G+ L
Sbjct:  184 NISDIFPCLKMFDVQGLRKKMERDMGKGKEITKKFIEERIEERKKGEKNRSIKDLLDVLIDFEGSGKDEPDKLSEDEITVIILEMFLAGTETTSSSVEWALTELLRHPQAMAKVKLEILQVIGPNKKFEECDIDSLPYMQAVLKEQLRLHPPLPLLIPRKAIQDTKFMGYDIPKGTQVLVNAWAIGRDPEYWDNPFEFKPERFLESKVDVKG------QNYELIPFGAGRRMCVGLPL 415          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 74/241 (30.71%), Postives = 121/241 (50.21%), Query Frame = 3
Query:    6 NYGDFIPLLRP---FLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEK---HKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLK-GNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILAL 707
            N  D+ P L     FLR    K + +  R  + FN    E      A +G K   H     +  ++  Q    +T +N+  I+ N+  AAIET+   +E++++EL+N+  V  K+++E+ T    G  V E +L  +PYL+A +KE +R+H P P L+PH +  + ++ G+TIP  ++++VNAW LA +P                   + +    G   D R++PFG GRR C G   A+
Sbjct:  244 NVEDYFPKLADVDLFLRIICAKAKSVSKRWDSLFNELLSE-----YALSGGKQGDHNSEDFVHLLLSLQKDYGLTTDNIKGILVNMFEAAIETSFLVLEYSMSELMNNRHVLAKLQKEVRTATPDGRMVMEEDLSRMPYLKATIKESMRIHPPAPFLLPHFSTHDCEINGYTIPAGTRVIVNAWALARDPTCWDKAEEFFPERFLEQGRDAEVDMYG--KDIRFVPFGAGRRICAGATFAI 477          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 73/243 (30.04%), Postives = 119/243 (48.97%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGE-----ITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPVTE-SNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVD-----FRYLPFGVGRRSCPGIIL 701
            N  D  P L+ F    L K       +     + F+++R +      EK K    +D +++ Q  G+     ++E  +   V  + +A  ETT  S+EWA+ EL+ HPE   K++ EIS  ++ N   E S++  LPY+QA +KE LRLH P+P L+P   +++ K  G+ +PK+++++VNAW +  +P                          G K+D     +  +PFG GRR C G+ L
Sbjct:  224 NVSDIFPFLKKFDLQSLRKKMARDMGKAVEIMSMFLKEREEERKKGTEKGKDF--LDVLLEFQGTGKDEPAKLSEHEIKIFVLEMFLAGTETTSSSVEWALTELLRHPEAMAKVKTEISQAIEPNRKFEDSDIENLPYMQAVLKESLRLHPPLPFLIPRETIQDTKFMGYDVPKDTQVLVNAWAIGRDPECWDDPMSFKPERFL-----------GSKIDVKGQHYGLIPFGAGRRMCVGLPL 453          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C93A1_SOYBN (Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.895e-25
Identity = 78/242 (32.23%), Postives = 128/242 (52.89%), Query Frame = 3
Query:    6 NYGDFIPLLRPF-LRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGE-------KHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILA 704
            N  DFI  L+PF L+G+  K ++ + R      +  +++R++    N E       K  +   +D   D   + ++ ++N+   + +I VA  +T+  S+EWA+AEL+N+P+V +K R+EI  V+ K   V ES++  LPYLQA V+E LRLH   PL+V   + + A + G+ IP ++++ VN W +  +P                   N   V G     + ++PFG GRR+CPG  LA
Sbjct:  217 NVSDFIWYLKPFDLQGFNRKIKETRDR-FDVVVDGIIKQRQEERRKNKETGTAKQFKDMLDVLLDMHEDENAEIKLDKKNIKAFIMDIFVAGTDTSAVSIEWAMAELINNPDVLEKARQEIDAVVGKSRMVEESDIANLPYLQAIVRETLRLHPGGPLVVRESS-KSAVVCGYDIPAKTRLFVNVWAIGRDPNHWEKPFEFRPERFIRDGQNQLDVRG---QHYHFIPFGSGRRTCPGASLA 453          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.895e-25
Identity = 73/234 (31.20%), Postives = 116/234 (49.57%), Query Frame = 3
Query:    6 NYGDFIPLLRPF-LRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILA 704
            N  D+ P+L  F L G   +  +      A +    +++R+     +G K K     +  +D  +   + +  +  ++  +  A  ET+  ++EWA+ EL  +P++  KIR EI TV+    V ES+   LPYL+A VKE LRLH P PLL+P   LE   +  +TIPK+ +I+VNAW +  +P                    +++       DF  +PFG GRR CPG+ +A
Sbjct:  214 NPADYFPMLGKFDLFGQRKEVAECLKGIYAIWGA-MLQERKLAKKVDGYKSK-----NDFVDVCLDSGLNDYQINALLMELFGAGTETSASTIEWAMTELTKNPKITAKIRSEIQTVVGERSVKESDFPNLPYLEATVKETLRLHPPTPLLLPRRALETCTILNYTIPKDCQIMVNAWGIGRDPKTWTDPLTFSPERF------LNSSVDFRGNDFSLIPFGAGRRICPGLPIA 435          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C71A8_MENPI (Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 66/234 (28.21%), Postives = 121/234 (51.71%), Query Frame = 3
Query:   12 GDFIPLLRPFLRGYLNKCRDLQSR--RLAFFNNNFVEK----RRKIMAANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKG-NPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPG 692
            GDF+P L      ++N+      R  R+A   + F+EK    R +  AA  E++ +   ++   +      I  +++  I+ ++  A  +TT   +EWA+ EL+ HPE+ +K++ E+  V+K  + +T+ ++ ++ YL+A +KE +R HTPIPLLVP +   + ++ G+ +P  + +++NAW +  +P                   +         +DF  +PFG GRR CPG
Sbjct:  227 GDFVPSL-----WWINRINGFDRRVDRIAKEMDEFLEKVIHERLENPAAKAEENFVDILLEIYRNNSAGVSIDRDSIKAIILDVFAAGTDTTAVVLEWAMTELLRHPEIMKKLQSEVRQVVKDKHNITDDDIEKMHYLKAVMKETMRFHTPIPLLVPRVARNDVEVMGYDVPVGTMVMINAWAIGRDPTSWDEPEKFRPERFLNSSVDFKG------LDFELIPFGAGRRGCPG 449          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C81D1_ARATH (Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 80/244 (32.79%), Postives = 123/244 (50.41%), Query Frame = 3
Query:    3 GNYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGEI---TEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREIST-VLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            GN  D++P+LR F   Y N+ + L      F      +KR       G++   +  IDH++  Q K +I   T++ +  I+  + +A   T+  ++EWA++ L+NHP+V  K R EI   V     + E++L ELPYL+  V E LRLH   PLLVPHM  E+ K+G + +P+ + ++VNAW +  +P                            +   + L FG+GRR+CPG  LA  I GL
Sbjct:  229 GNAVDYVPILRLF-SSYENRVKKLGEETDKFLQGLIDDKR-------GQQETGTTMIDHLLVLQ-KSDIEYYTDQIIKGIILIMVIAGTNTSAVTLEWALSNLLNHPDVISKARDEIDNRVGLDRLIEEADLSELPYLKNIVLETLRLHPATPLLVPHMASEDCKIGSYDMPRGTTLLVNAWAIHRDPNTWDDPDSFKPERFEKE-----------EEAQKLLAFGLGRRACPGSGLAQRIVGL 452          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 70/234 (29.91%), Postives = 116/234 (49.57%), Query Frame = 3
Query:    6 NYGDFIPLLRPF-LRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILA 704
            N  D+ P+L  F L G   +  +      A +    +++R+     +G + K     +  +D  +   + +  +  ++  +  A  ET+  ++EWA+ EL  +P++  K+R E+ TV+    V ES+   LPYL+A VKE LRLH P PLL+P   LE   +  +TIPK+ +I+VNAW +  +P                    +++       DF  +PFG GRR CPG+ +A
Sbjct:  215 NPADYFPMLGKFDLFGQRKEVAECLKGIYAIWGA-MLQERKLAKKVDGYQSK-----NDFVDVCLDSGLNDYQINALLMELFGAGTETSASTIEWAMTELTKNPKITAKLRSELQTVVGERSVKESDFPNLPYLEATVKETLRLHPPTPLLLPRRALETCTILNYTIPKDCQIMVNAWGIGRDPKTWIDPLTFSPERF------LNSSVDFRGNDFSLIPFGAGRRICPGLPIA 436          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C93A2_SOYBN (Cytochrome P450 93A2 OS=Glycine max GN=CYP93A2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 81/246 (32.93%), Postives = 129/246 (52.44%), Query Frame = 3
Query:    6 NYGDFIPLLRPF-LRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGE-------KHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNP--VTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPI 713
            N  DFI  L+PF L+G+  + R  + R  A  +   +++R +    N E       K  +   +D   D   + ++T+EN+   + +I VA  +T+  +MEWA+AEL+N+P V +K R+EI  V+ GN   + ES++  LPYLQA V+E LR+H   PL+V   + +   + G+ IP ++++ VN W +  +P                   +   V G     + ++PFG GRRSCPG  LAL I
Sbjct:  210 NVSDFIWFLKPFDLQGFNKRIRKTRIRFDAVLDR-IIKQREEERRNNKEIGGTRQFKDILDVLLDIGEDDSSEIKLTKENIKAFIMDIFVAGTDTSAATMEWAMAELINNPCVLEKARQEIDAVV-GNSRIIEESDIVNLPYLQAIVRETLRIHPGGPLIVRESS-KSVVVCGYEIPAKTRLFVNVWAIGRDPNHWENPFEFRPERFFENGQSQLDVRG---QHYHFIPFGSGRRSCPGTSLALQI 449          
The following BLAST results are available for this feature:
BLAST of CX297882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
C98A3_ARATH1.813e-2734.30Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C76A1_SOLME2.619e-2629.41Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]
C71C1_MAIZE1.300e-2530.71Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
C76A2_SOLME2.217e-2530.04Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
C93A1_SOYBN2.895e-2532.23Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=... [more]
C80B1_ESCCA2.895e-2531.20(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
C71A8_MENPI6.450e-2528.21Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8... [more]
C81D1_ARATH1.100e-2432.79Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CY... [more]
C80B2_ESCCA2.451e-2429.91(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C93A2_SOYBN4.181e-2432.93Cytochrome P450 93A2 OS=Glycine max GN=CYP93A2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06006C03SK RindPdig24 Citrus clementina cDNA clone C06006C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297882 ID=CX297882; Name=CX297882; organism=Citrus clementina; type=EST; length=731bp
GAGGCAATTATGGAGATTTTATTCCTTTGCTCAGGCCATTTTTAAGAGGG
TACTTGAACAAGTGCAGAGACTTGCAGAGTAGGAGGTTGGCTTTCTTTAA
CAACAATTTTGTTGAGAAAAGAAGGAAAATCATGGCTGCCAATGGAGAGA
AGCACAAGATAAGCTGCGCCATTGATCACATAATTGATGCTCAAATGAAA
GGGGAGATCACTGAAGAAAATGTTATTTACATTGTTGAGAACATAAATGT
GGCGGCAATAGAAACAACACTATGGTCCATGGAATGGGCAATAGCTGAGT
TAGTCAATCACCCAGAGGTTCAACAGAAGATCCGTCGTGAAATCTCGACA
GTCCTTAAAGGAAATCCGGTCACAGAATCAAACCTGCATGAATTACCGTA
CCTGCAAGCCGCAGTAAAAGAGGTACTAAGATTACACACTCCAATTCCGT
TGTTGGTGCCACATATGAATCTAGAAGAAGCAAAACTTGGAGGCTTCACA
ATTCCTAAAGAGTCCAAAATTGTGGTGAATGCATGGTGGCTAGCAAACAA
CCCCAAATGGTGGGAAAAACCTGAGGAGTTTCGGCCAGAGAGATTCTTGG
AAGAGGAATGTAATATTGATGCTGTTGCTGGTGGTGGCAAAGTTGACTTC
AGGTACTTGCCTTTTGGCGTGGGAAGGCGAAGCTGCCCTGGAATCATACT
TGCATTACCAATCTGGGGCTTGTGATTGCAA
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